miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14453 5' -58.3 NC_003521.1 + 135151 0.66 0.894174
Target:  5'- aCCCCaucgGGCAACU--GAUCGUGCCGc -3'
miRNA:   3'- gGGGGg---UCGUUGGggCUAGCAUGGUa -5'
14453 5' -58.3 NC_003521.1 + 11926 0.66 0.887758
Target:  5'- gUCCCCCAGCcgGGCCCgGcUgGUGCUc- -3'
miRNA:   3'- -GGGGGGUCG--UUGGGgCuAgCAUGGua -5'
14453 5' -58.3 NC_003521.1 + 214048 0.66 0.887758
Target:  5'- gCCCCCCgAGCGcguCCCC-AUCGUcaucucuuacACCGg -3'
miRNA:   3'- -GGGGGG-UCGUu--GGGGcUAGCA----------UGGUa -5'
14453 5' -58.3 NC_003521.1 + 63034 0.66 0.887758
Target:  5'- gCCCaCCAGCGgacagGCCCCG-UCGgcCCu- -3'
miRNA:   3'- gGGG-GGUCGU-----UGGGGCuAGCauGGua -5'
14453 5' -58.3 NC_003521.1 + 90289 0.66 0.887105
Target:  5'- gCCCCCguaggggGGguACCCCGGUaagaaaacuaCGUACCc- -3'
miRNA:   3'- gGGGGG-------UCguUGGGGCUA----------GCAUGGua -5'
14453 5' -58.3 NC_003521.1 + 69391 0.67 0.881137
Target:  5'- aCCCCCCuGCu-CCUCaAUCGcACCGUg -3'
miRNA:   3'- -GGGGGGuCGuuGGGGcUAGCaUGGUA- -5'
14453 5' -58.3 NC_003521.1 + 92484 0.67 0.874314
Target:  5'- gUCUCCCAGCcuCUCCGggCGUgguccGCCAc -3'
miRNA:   3'- -GGGGGGUCGuuGGGGCuaGCA-----UGGUa -5'
14453 5' -58.3 NC_003521.1 + 39939 0.67 0.874314
Target:  5'- cCUCCgCCAGCAGCUCCagcagCGUAUCGg -3'
miRNA:   3'- -GGGG-GGUCGUUGGGGcua--GCAUGGUa -5'
14453 5' -58.3 NC_003521.1 + 163401 0.67 0.874314
Target:  5'- uCCUCUCGGCcguGGCCCCGucGUCGgcUGCCGc -3'
miRNA:   3'- -GGGGGGUCG---UUGGGGC--UAGC--AUGGUa -5'
14453 5' -58.3 NC_003521.1 + 161319 0.67 0.874314
Target:  5'- gCCCaCCAGCAagcGCUCCGG-CGUGCa-- -3'
miRNA:   3'- gGGG-GGUCGU---UGGGGCUaGCAUGgua -5'
14453 5' -58.3 NC_003521.1 + 163582 0.67 0.867294
Target:  5'- uCCCCCCGuGUGugCCCuGUCGUcccCCGUa -3'
miRNA:   3'- -GGGGGGU-CGUugGGGcUAGCAu--GGUA- -5'
14453 5' -58.3 NC_003521.1 + 85498 0.67 0.860081
Target:  5'- gCCCCCGccGgGACCCgCGGUCGUcucacccaggacGCCGa -3'
miRNA:   3'- gGGGGGU--CgUUGGG-GCUAGCA------------UGGUa -5'
14453 5' -58.3 NC_003521.1 + 223109 0.67 0.85268
Target:  5'- cUCCCCCGGC-ACCCaCGugCGUuGCCAg -3'
miRNA:   3'- -GGGGGGUCGuUGGG-GCuaGCA-UGGUa -5'
14453 5' -58.3 NC_003521.1 + 141326 0.67 0.85268
Target:  5'- gCCCUCCAGCGGCa-CGA--GUGCCAg -3'
miRNA:   3'- -GGGGGGUCGUUGggGCUagCAUGGUa -5'
14453 5' -58.3 NC_003521.1 + 8254 0.67 0.845097
Target:  5'- gCCCCCCgcucaccacacAGCAGCCCCcGUaGUagGCCAc -3'
miRNA:   3'- -GGGGGG-----------UCGUUGGGGcUAgCA--UGGUa -5'
14453 5' -58.3 NC_003521.1 + 128742 0.68 0.837339
Target:  5'- uCCCgCCAGCcGCCCCuGAUCcccACCGc -3'
miRNA:   3'- -GGGgGGUCGuUGGGG-CUAGca-UGGUa -5'
14453 5' -58.3 NC_003521.1 + 93672 0.68 0.82941
Target:  5'- uUCCCCuGUcccgGACCCCGGUCG-GCCu- -3'
miRNA:   3'- gGGGGGuCG----UUGGGGCUAGCaUGGua -5'
14453 5' -58.3 NC_003521.1 + 42525 0.68 0.828608
Target:  5'- aCCCCCAGgGaacuccagucACCCCGAugacugcUgGUGCCGc -3'
miRNA:   3'- gGGGGGUCgU----------UGGGGCU-------AgCAUGGUa -5'
14453 5' -58.3 NC_003521.1 + 94941 0.68 0.821318
Target:  5'- gCCgCCGGCGGCCUCG-UCGUcggcGCCGc -3'
miRNA:   3'- gGGgGGUCGUUGGGGCuAGCA----UGGUa -5'
14453 5' -58.3 NC_003521.1 + 126092 0.68 0.821318
Target:  5'- aCCCCCaCGGCGugCCggauccagcgguCGAucucgUCGUGCCGg -3'
miRNA:   3'- -GGGGG-GUCGUugGG------------GCU-----AGCAUGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.