miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1446 3' -58 NC_001335.1 + 25118 0.66 0.532033
Target:  5'- gGAUCUGUAcagcgggcacgcggaGCG-CCGCAUCuaCCCGGUg -3'
miRNA:   3'- -CUAGACGU---------------UGCgGGUGUAG--GGGCCGu -5'
1446 3' -58 NC_001335.1 + 17590 0.66 0.506848
Target:  5'- aGGUUgGCGAgaGCCgACuggaucAUCCCCGGCAg -3'
miRNA:   3'- -CUAGaCGUUg-CGGgUG------UAGGGGCCGU- -5'
1446 3' -58 NC_001335.1 + 37216 0.67 0.476109
Target:  5'- --gCUGCAucuucuccagaACGCCUGCGUaaCCGGCGa -3'
miRNA:   3'- cuaGACGU-----------UGCGGGUGUAggGGCCGU- -5'
1446 3' -58 NC_001335.1 + 48400 0.67 0.476109
Target:  5'- ----cGCAGCGgCCACGUCCUgcUGGCc -3'
miRNA:   3'- cuagaCGUUGCgGGUGUAGGG--GCCGu -5'
1446 3' -58 NC_001335.1 + 25028 0.67 0.470072
Target:  5'- gGGUagaUGCGGCGCuCCGCGugcccgcuguacagaUCCCUGGUg -3'
miRNA:   3'- -CUAg--ACGUUGCG-GGUGU---------------AGGGGCCGu -5'
1446 3' -58 NC_001335.1 + 27498 0.67 0.43663
Target:  5'- gGAUCUgGUGGCGuCCCACcUCUCCgaGGCAg -3'
miRNA:   3'- -CUAGA-CGUUGC-GGGUGuAGGGG--CCGU- -5'
1446 3' -58 NC_001335.1 + 30160 0.67 0.433745
Target:  5'- gGGUCUGUGGC-CCCGCGUgcuugacacgcagaUCCUGGCGa -3'
miRNA:   3'- -CUAGACGUUGcGGGUGUA--------------GGGGCCGU- -5'
1446 3' -58 NC_001335.1 + 22194 0.68 0.427057
Target:  5'- --cCUGCAGCGUCUGCugaacaaCCCGGCc -3'
miRNA:   3'- cuaGACGUUGCGGGUGuag----GGGCCGu -5'
1446 3' -58 NC_001335.1 + 666 0.69 0.372346
Target:  5'- aGAagUGCAGCGCgCCGcCGUUCuuGGCGg -3'
miRNA:   3'- -CUagACGUUGCG-GGU-GUAGGggCCGU- -5'
1446 3' -58 NC_001335.1 + 40041 0.7 0.330539
Target:  5'- cGAUCaGCGGCGUCCACgaauGUCCCUucgGGUAc -3'
miRNA:   3'- -CUAGaCGUUGCGGGUG----UAGGGG---CCGU- -5'
1446 3' -58 NC_001335.1 + 5480 0.7 0.307163
Target:  5'- --cCUGCucgGCaCCGCcgCCCCGGCAc -3'
miRNA:   3'- cuaGACGuugCG-GGUGuaGGGGCCGU- -5'
1446 3' -58 NC_001335.1 + 33944 0.75 0.155555
Target:  5'- ----aGUGACGaguCCCACAUCCCCGGCu -3'
miRNA:   3'- cuagaCGUUGC---GGGUGUAGGGGCCGu -5'
1446 3' -58 NC_001335.1 + 7388 1.08 0.000521
Target:  5'- cGAUCUGCAACGCCCACAUCCCCGGCAc -3'
miRNA:   3'- -CUAGACGUUGCGGGUGUAGGGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.