miRNA display CGI


Results 1 - 20 of 316 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14461 3' -57.8 NC_003521.1 + 99500 0.66 0.914583
Target:  5'- uGGCACuCGUGccGCUGGA-GGGCGCCc -3'
miRNA:   3'- -UCGUG-GUAUucCGGUCUgUCCGCGGc -5'
14461 3' -57.8 NC_003521.1 + 123378 0.66 0.914583
Target:  5'- cGCACCGacaggcGGCUAGuCAGGcCGCgCGg -3'
miRNA:   3'- uCGUGGUauu---CCGGUCuGUCC-GCG-GC- -5'
14461 3' -57.8 NC_003521.1 + 198035 0.66 0.914583
Target:  5'- uGCAgCCGccGGGCUgcacGGGCAGGUGCUu -3'
miRNA:   3'- uCGU-GGUauUCCGG----UCUGUCCGCGGc -5'
14461 3' -57.8 NC_003521.1 + 233603 0.66 0.914583
Target:  5'- cGGCGCCAUGaucuccggcgGGGUgcucgaGGGCAauuucagcggcGGCGCCGu -3'
miRNA:   3'- -UCGUGGUAU----------UCCGg-----UCUGU-----------CCGCGGC- -5'
14461 3' -57.8 NC_003521.1 + 61815 0.66 0.914583
Target:  5'- cGUugCGUGauuucuucgagGGGCCcuGGGaGGGCGCCGc -3'
miRNA:   3'- uCGugGUAU-----------UCCGG--UCUgUCCGCGGC- -5'
14461 3' -57.8 NC_003521.1 + 33518 0.66 0.914583
Target:  5'- cGCACUcauagacacugAUGAGGCCGauGAaguaaAGGCgGCCGg -3'
miRNA:   3'- uCGUGG-----------UAUUCCGGU--CUg----UCCG-CGGC- -5'
14461 3' -57.8 NC_003521.1 + 60311 0.66 0.914583
Target:  5'- cAGCGCCuac--GCgCAGAC-GGCGCUGa -3'
miRNA:   3'- -UCGUGGuauucCG-GUCUGuCCGCGGC- -5'
14461 3' -57.8 NC_003521.1 + 75990 0.66 0.914016
Target:  5'- uGGCGCCGgcc-GCCGGuuccuccucccccGCGGGCGCUc -3'
miRNA:   3'- -UCGUGGUauucCGGUC-------------UGUCCGCGGc -5'
14461 3' -57.8 NC_003521.1 + 75042 0.66 0.912874
Target:  5'- cAGCGCCAgcGGGCUGgccuucggcacgauGAUGGGCaaGCCGc -3'
miRNA:   3'- -UCGUGGUauUCCGGU--------------CUGUCCG--CGGC- -5'
14461 3' -57.8 NC_003521.1 + 39455 0.66 0.911145
Target:  5'- cGGCGCCG-AGGGCCgcgucgaaggauugcGGAUcGGCGCa- -3'
miRNA:   3'- -UCGUGGUaUUCCGG---------------UCUGuCCGCGgc -5'
14461 3' -57.8 NC_003521.1 + 35504 0.66 0.908809
Target:  5'- aGGCGCCGUAGGGUgucg-AGGUGUCGa -3'
miRNA:   3'- -UCGUGGUAUUCCGgucugUCCGCGGC- -5'
14461 3' -57.8 NC_003521.1 + 166417 0.66 0.908809
Target:  5'- gAGCGCgAUGuAGaGCCAGACccGGCGUgGc -3'
miRNA:   3'- -UCGUGgUAU-UC-CGGUCUGu-CCGCGgC- -5'
14461 3' -57.8 NC_003521.1 + 118731 0.66 0.908809
Target:  5'- cGGCACCGgcacGGGCU--GCAGGuUGCUGg -3'
miRNA:   3'- -UCGUGGUau--UCCGGucUGUCC-GCGGC- -5'
14461 3' -57.8 NC_003521.1 + 229627 0.66 0.908809
Target:  5'- aGGCGCgAc--GGCUcugaAGACAGGUGCUGc -3'
miRNA:   3'- -UCGUGgUauuCCGG----UCUGUCCGCGGC- -5'
14461 3' -57.8 NC_003521.1 + 151520 0.66 0.908809
Target:  5'- -cCGCCGUc-GGCCAGAgGcGGCGCgGa -3'
miRNA:   3'- ucGUGGUAuuCCGGUCUgU-CCGCGgC- -5'
14461 3' -57.8 NC_003521.1 + 174180 0.66 0.908809
Target:  5'- cGCGCacgAAGGUC-GACAGGUGCg- -3'
miRNA:   3'- uCGUGguaUUCCGGuCUGUCCGCGgc -5'
14461 3' -57.8 NC_003521.1 + 211466 0.66 0.908809
Target:  5'- gGGCagGCCAUGAGGCgCAGggcGCAG-CGCaCGu -3'
miRNA:   3'- -UCG--UGGUAUUCCG-GUC---UGUCcGCG-GC- -5'
14461 3' -57.8 NC_003521.1 + 195574 0.66 0.908809
Target:  5'- aAGCGCUugGGGGUCAGGCccgucugccGGGCgGCCc -3'
miRNA:   3'- -UCGUGGuaUUCCGGUCUG---------UCCG-CGGc -5'
14461 3' -57.8 NC_003521.1 + 136760 0.66 0.908809
Target:  5'- uAGuCACCAacgugcuGGCgCAGAC-GGCGUCGg -3'
miRNA:   3'- -UC-GUGGUauu----CCG-GUCUGuCCGCGGC- -5'
14461 3' -57.8 NC_003521.1 + 103768 0.66 0.902813
Target:  5'- cAGCA----GGGGCCGGGC-GGUGCCu -3'
miRNA:   3'- -UCGUgguaUUCCGGUCUGuCCGCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.