miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14461 5' -55.4 NC_003521.1 + 137066 0.66 0.976957
Target:  5'- gCCCGGCCCCugcUGUCUUccGCCAc----- -3'
miRNA:   3'- -GGGCUGGGGc--ACAGAA--CGGUaacguc -5'
14461 5' -55.4 NC_003521.1 + 131395 0.66 0.974525
Target:  5'- cCCaCGGCCCUGUcuaUCcugGCCAUgaUGCAGc -3'
miRNA:   3'- -GG-GCUGGGGCAc--AGaa-CGGUA--ACGUC- -5'
14461 5' -55.4 NC_003521.1 + 138916 0.66 0.974525
Target:  5'- gCCGGCUCgGUGUCggaCCAcgGCGGc -3'
miRNA:   3'- gGGCUGGGgCACAGaacGGUaaCGUC- -5'
14461 5' -55.4 NC_003521.1 + 214306 0.66 0.971912
Target:  5'- cCuuGGCUCCGUGcCUcuugUGCCAa-GCAGu -3'
miRNA:   3'- -GggCUGGGGCACaGA----ACGGUaaCGUC- -5'
14461 5' -55.4 NC_003521.1 + 91952 0.66 0.966116
Target:  5'- gCgGACCCCGUGgcg-GCgAggGCGGa -3'
miRNA:   3'- gGgCUGGGGCACagaaCGgUaaCGUC- -5'
14461 5' -55.4 NC_003521.1 + 118139 0.66 0.966116
Target:  5'- aCCGGCCCCGcagcUGUCggUGCUgg-GCGc -3'
miRNA:   3'- gGGCUGGGGC----ACAGa-ACGGuaaCGUc -5'
14461 5' -55.4 NC_003521.1 + 43945 0.66 0.962923
Target:  5'- cCCCGGCcucaCCCGcGg--UGCCGUUGCuGg -3'
miRNA:   3'- -GGGCUG----GGGCaCagaACGGUAACGuC- -5'
14461 5' -55.4 NC_003521.1 + 181025 0.67 0.959526
Target:  5'- gUCCaGCgCCGUGUCggUGUCcUUGCGGa -3'
miRNA:   3'- -GGGcUGgGGCACAGa-ACGGuAACGUC- -5'
14461 5' -55.4 NC_003521.1 + 65533 0.67 0.95592
Target:  5'- gCCCGAgacCCCCGUGUCcaagGCaugUGCc- -3'
miRNA:   3'- -GGGCU---GGGGCACAGaa--CGguaACGuc -5'
14461 5' -55.4 NC_003521.1 + 150608 0.67 0.948068
Target:  5'- -aCGuCCCCGUGg---GCUGUUGCGGc -3'
miRNA:   3'- ggGCuGGGGCACagaaCGGUAACGUC- -5'
14461 5' -55.4 NC_003521.1 + 163409 0.67 0.948068
Target:  5'- gCCgUGGCCCCGUcGUCggcUGCCGcUGCc- -3'
miRNA:   3'- -GG-GCUGGGGCA-CAGa--ACGGUaACGuc -5'
14461 5' -55.4 NC_003521.1 + 148754 0.67 0.943816
Target:  5'- cCCCGAcCCCCG-GUCc-GCCAUcGCu- -3'
miRNA:   3'- -GGGCU-GGGGCaCAGaaCGGUAaCGuc -5'
14461 5' -55.4 NC_003521.1 + 95239 0.67 0.943816
Target:  5'- gCCaCGGCCgCCGcGUCgUGCCGccGCAGc -3'
miRNA:   3'- -GG-GCUGG-GGCaCAGaACGGUaaCGUC- -5'
14461 5' -55.4 NC_003521.1 + 227901 0.68 0.939342
Target:  5'- uCCCGGCCCUG-GUCccGCCAccaGCGc -3'
miRNA:   3'- -GGGCUGGGGCaCAGaaCGGUaa-CGUc -5'
14461 5' -55.4 NC_003521.1 + 188617 0.68 0.939342
Target:  5'- aCCGGCCCCGUacuGUCUgaugagcucGCCGccccgGCGGc -3'
miRNA:   3'- gGGCUGGGGCA---CAGAa--------CGGUaa---CGUC- -5'
14461 5' -55.4 NC_003521.1 + 109623 0.68 0.929725
Target:  5'- gCCGGCCCC---UCUcGCCGUaGCGGg -3'
miRNA:   3'- gGGCUGGGGcacAGAaCGGUAaCGUC- -5'
14461 5' -55.4 NC_003521.1 + 211449 0.68 0.929725
Target:  5'- cCUCGGCCUCGcgGUCggggcagGCCAUgaggcGCAGg -3'
miRNA:   3'- -GGGCUGGGGCa-CAGaa-----CGGUAa----CGUC- -5'
14461 5' -55.4 NC_003521.1 + 38916 0.68 0.92458
Target:  5'- cCCCG-CCCUGUGUCgugGCg---GCAGu -3'
miRNA:   3'- -GGGCuGGGGCACAGaa-CGguaaCGUC- -5'
14461 5' -55.4 NC_003521.1 + 151092 0.68 0.913617
Target:  5'- gCCGACCCCucggGUCggGCCGcUGgGGg -3'
miRNA:   3'- gGGCUGGGGca--CAGaaCGGUaACgUC- -5'
14461 5' -55.4 NC_003521.1 + 155595 0.7 0.861057
Target:  5'- gCCGGCCCCaUGUCUcUGuCCGgcGCGGc -3'
miRNA:   3'- gGGCUGGGGcACAGA-AC-GGUaaCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.