miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14464 3' -60.6 NC_003521.1 + 112620 1.12 0.001222
Target:  5'- aGGGGGCUCUACACCCAGCCCAGGUGGa -3'
miRNA:   3'- -CCCCCGAGAUGUGGGUCGGGUCCACC- -5'
14464 3' -60.6 NC_003521.1 + 36695 0.79 0.196496
Target:  5'- -cGGGCUCcgGCGCCUGGCCCgagcAGGUGGa -3'
miRNA:   3'- ccCCCGAGa-UGUGGGUCGGG----UCCACC- -5'
14464 3' -60.6 NC_003521.1 + 135160 0.77 0.2825
Target:  5'- uGGuGGuGUUCUGCGCCaggaAGCCCAGGaUGGu -3'
miRNA:   3'- -CC-CC-CGAGAUGUGGg---UCGGGUCC-ACC- -5'
14464 3' -60.6 NC_003521.1 + 22982 0.75 0.328628
Target:  5'- uGGGGCUCUGCGCCUGGUUgAcGGUGa -3'
miRNA:   3'- cCCCCGAGAUGUGGGUCGGgU-CCACc -5'
14464 3' -60.6 NC_003521.1 + 177281 0.74 0.38787
Target:  5'- aGGGcGGCUCcgugACGCUgGGCCCAGGg-- -3'
miRNA:   3'- -CCC-CCGAGa---UGUGGgUCGGGUCCacc -5'
14464 3' -60.6 NC_003521.1 + 102973 0.74 0.411825
Target:  5'- cGGGGCUCUggcgggGCgGCCCAGCCgCGGcGUGa -3'
miRNA:   3'- cCCCCGAGA------UG-UGGGUCGG-GUC-CACc -5'
14464 3' -60.6 NC_003521.1 + 27513 0.73 0.428295
Target:  5'- gGGGGGCg-UGCgGCCCGaggcGCCCAcGGUGGc -3'
miRNA:   3'- -CCCCCGagAUG-UGGGU----CGGGU-CCACC- -5'
14464 3' -60.6 NC_003521.1 + 121794 0.72 0.479926
Target:  5'- aGGuGGCgguacUUGCGCUCGGCCguGGUGGg -3'
miRNA:   3'- cCC-CCGa----GAUGUGGGUCGGguCCACC- -5'
14464 3' -60.6 NC_003521.1 + 120943 0.72 0.507768
Target:  5'- cGGGGCgacgaggagaaccgaCUGCggACCgaGGCCCGGGUGGa -3'
miRNA:   3'- cCCCCGa--------------GAUG--UGGg-UCGGGUCCACC- -5'
14464 3' -60.6 NC_003521.1 + 78474 0.71 0.547457
Target:  5'- gGGGGGCUgcGCGCCCAcGCCCgcagucgccgccugcGGGUa- -3'
miRNA:   3'- -CCCCCGAgaUGUGGGU-CGGG---------------UCCAcc -5'
14464 3' -60.6 NC_003521.1 + 91444 0.71 0.547457
Target:  5'- uGGGGGCUUUcuaugcgcgcauacGCGCgCAGCUCgcggguguaugcguGGGUGGg -3'
miRNA:   3'- -CCCCCGAGA--------------UGUGgGUCGGG--------------UCCACC- -5'
14464 3' -60.6 NC_003521.1 + 218774 0.7 0.581414
Target:  5'- uGGGGUgUCUGCGUCCGGCUCugacuucuGGGUGGg -3'
miRNA:   3'- cCCCCG-AGAUGUGGGUCGGG--------UCCACC- -5'
14464 3' -60.6 NC_003521.1 + 110009 0.7 0.600474
Target:  5'- aGGcGGGagaUgUGCACCCGGCUCucGUGGg -3'
miRNA:   3'- -CC-CCCg--AgAUGUGGGUCGGGucCACC- -5'
14464 3' -60.6 NC_003521.1 + 227217 0.7 0.60621
Target:  5'- -aGGGCUacgaagagcccgGCACCCaccAGaCCCAGGUGGa -3'
miRNA:   3'- ccCCCGAga----------UGUGGG---UC-GGGUCCACC- -5'
14464 3' -60.6 NC_003521.1 + 206614 0.7 0.610038
Target:  5'- cGGGcGCcgUCUACGCC--GCCCuGGUGGg -3'
miRNA:   3'- cCCC-CG--AGAUGUGGguCGGGuCCACC- -5'
14464 3' -60.6 NC_003521.1 + 200384 0.7 0.627285
Target:  5'- -cGGGCUagagcgcgcgaGCACCUGGCCguGGUGGa -3'
miRNA:   3'- ccCCCGAga---------UGUGGGUCGGguCCACC- -5'
14464 3' -60.6 NC_003521.1 + 54337 0.69 0.638791
Target:  5'- cGGGGCUCU-CGCCCugGGCCacucggGGcGUGGc -3'
miRNA:   3'- cCCCCGAGAuGUGGG--UCGGg-----UC-CACC- -5'
14464 3' -60.6 NC_003521.1 + 44366 0.69 0.667502
Target:  5'- uGGGGCUgCggcccACGCCCgaGGCCgAGGUGc -3'
miRNA:   3'- cCCCCGA-Ga----UGUGGG--UCGGgUCCACc -5'
14464 3' -60.6 NC_003521.1 + 150263 0.69 0.677032
Target:  5'- aGGGGGCg--GUACCCAcuccuCCCAGGUGu -3'
miRNA:   3'- -CCCCCGagaUGUGGGUc----GGGUCCACc -5'
14464 3' -60.6 NC_003521.1 + 120236 0.69 0.677032
Target:  5'- --uGGCagUGCAUCCGGCCgaAGGUGGa -3'
miRNA:   3'- cccCCGagAUGUGGGUCGGg-UCCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.