miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14464 3' -60.6 NC_003521.1 + 4214 0.67 0.77809
Target:  5'- aGGGGGUUUga-AgCCGGcCCCGGGaGGa -3'
miRNA:   3'- -CCCCCGAGaugUgGGUC-GGGUCCaCC- -5'
14464 3' -60.6 NC_003521.1 + 6532 0.67 0.795266
Target:  5'- -aGGGCggUCUGCGuCCCGcCCCAGGgcaGGg -3'
miRNA:   3'- ccCCCG--AGAUGU-GGGUcGGGUCCa--CC- -5'
14464 3' -60.6 NC_003521.1 + 16511 0.66 0.835825
Target:  5'- -cGGGCUgcgGCGCUCGGCUCGGcUGGa -3'
miRNA:   3'- ccCCCGAga-UGUGGGUCGGGUCcACC- -5'
14464 3' -60.6 NC_003521.1 + 20320 0.66 0.828013
Target:  5'- aGGaGGCcaccacgCUGCugCUcuCCCGGGUGGa -3'
miRNA:   3'- cCC-CCGa------GAUGugGGucGGGUCCACC- -5'
14464 3' -60.6 NC_003521.1 + 22354 0.67 0.760454
Target:  5'- cGGGGCcaCUGCGCCCAcGgCguGGUGc -3'
miRNA:   3'- cCCCCGa-GAUGUGGGU-CgGguCCACc -5'
14464 3' -60.6 NC_003521.1 + 22982 0.75 0.328628
Target:  5'- uGGGGCUCUGCGCCUGGUUgAcGGUGa -3'
miRNA:   3'- cCCCCGAGAUGUGGGUCGGgU-CCACc -5'
14464 3' -60.6 NC_003521.1 + 27513 0.73 0.428295
Target:  5'- gGGGGGCg-UGCgGCCCGaggcGCCCAcGGUGGc -3'
miRNA:   3'- -CCCCCGagAUG-UGGGU----CGGGU-CCACC- -5'
14464 3' -60.6 NC_003521.1 + 36695 0.79 0.196496
Target:  5'- -cGGGCUCcgGCGCCUGGCCCgagcAGGUGGa -3'
miRNA:   3'- ccCCCGAGa-UGUGGGUCGGG----UCCACC- -5'
14464 3' -60.6 NC_003521.1 + 38247 0.66 0.803665
Target:  5'- cGGGGCgg-AgACgCGGCCCAGGg-- -3'
miRNA:   3'- cCCCCGagaUgUGgGUCGGGUCCacc -5'
14464 3' -60.6 NC_003521.1 + 38341 0.66 0.811106
Target:  5'- uGGGGGCagUagccgaagacgGCACCCAGCUcguccagcacuagCAGGgccUGGg -3'
miRNA:   3'- -CCCCCGagA-----------UGUGGGUCGG-------------GUCC---ACC- -5'
14464 3' -60.6 NC_003521.1 + 38587 0.66 0.811926
Target:  5'- uGGGGCgcgACGCCguGUCCcuGGGUGu -3'
miRNA:   3'- cCCCCGagaUGUGGguCGGG--UCCACc -5'
14464 3' -60.6 NC_003521.1 + 44366 0.69 0.667502
Target:  5'- uGGGGCUgCggcccACGCCCgaGGCCgAGGUGc -3'
miRNA:   3'- cCCCCGA-Ga----UGUGGG--UCGGgUCCACc -5'
14464 3' -60.6 NC_003521.1 + 47832 0.67 0.795266
Target:  5'- cGGGGUUUUGCAgUCCAGgaCGGGUGa -3'
miRNA:   3'- cCCCCGAGAUGU-GGGUCggGUCCACc -5'
14464 3' -60.6 NC_003521.1 + 54337 0.69 0.638791
Target:  5'- cGGGGCUCU-CGCCCugGGCCacucggGGcGUGGc -3'
miRNA:   3'- cCCCCGAGAuGUGGG--UCGGg-----UC-CACC- -5'
14464 3' -60.6 NC_003521.1 + 76533 0.67 0.760454
Target:  5'- -aGGGC-CUGCGCCguCAGCCCGcGGUaguGGa -3'
miRNA:   3'- ccCCCGaGAUGUGG--GUCGGGU-CCA---CC- -5'
14464 3' -60.6 NC_003521.1 + 78474 0.71 0.547457
Target:  5'- gGGGGGCUgcGCGCCCAcGCCCgcagucgccgccugcGGGUa- -3'
miRNA:   3'- -CCCCCGAgaUGUGGGU-CGGG---------------UCCAcc -5'
14464 3' -60.6 NC_003521.1 + 84890 0.67 0.77809
Target:  5'- cGGGuGGCgcgaguaggccgUCaGCGCCCGGUCCAGcaGGg -3'
miRNA:   3'- -CCC-CCG------------AGaUGUGGGUCGGGUCcaCC- -5'
14464 3' -60.6 NC_003521.1 + 91444 0.71 0.547457
Target:  5'- uGGGGGCUUUcuaugcgcgcauacGCGCgCAGCUCgcggguguaugcguGGGUGGg -3'
miRNA:   3'- -CCCCCGAGA--------------UGUGgGUCGGG--------------UCCACC- -5'
14464 3' -60.6 NC_003521.1 + 95197 0.67 0.769326
Target:  5'- cGGaaCUCcACGCCCGGCaCCGGGUGc -3'
miRNA:   3'- cCCccGAGaUGUGGGUCG-GGUCCACc -5'
14464 3' -60.6 NC_003521.1 + 102973 0.74 0.411825
Target:  5'- cGGGGCUCUggcgggGCgGCCCAGCCgCGGcGUGa -3'
miRNA:   3'- cCCCCGAGA------UG-UGGGUCGG-GUC-CACc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.