miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14464 3' -60.6 NC_003521.1 + 112620 1.12 0.001222
Target:  5'- aGGGGGCUCUACACCCAGCCCAGGUGGa -3'
miRNA:   3'- -CCCCCGAGAUGUGGGUCGGGUCCACC- -5'
14464 3' -60.6 NC_003521.1 + 4214 0.67 0.77809
Target:  5'- aGGGGGUUUga-AgCCGGcCCCGGGaGGa -3'
miRNA:   3'- -CCCCCGAGaugUgGGUC-GGGUCCaCC- -5'
14464 3' -60.6 NC_003521.1 + 84890 0.67 0.77809
Target:  5'- cGGGuGGCgcgaguaggccgUCaGCGCCCGGUCCAGcaGGg -3'
miRNA:   3'- -CCC-CCG------------AGaUGUGGGUCGGGUCcaCC- -5'
14464 3' -60.6 NC_003521.1 + 115826 0.67 0.786739
Target:  5'- cGGGuGGCUCaGCagGCgCUGGCUCAGGcGGg -3'
miRNA:   3'- -CCC-CCGAGaUG--UG-GGUCGGGUCCaCC- -5'
14464 3' -60.6 NC_003521.1 + 238475 0.66 0.803665
Target:  5'- cGGGGCgg-AgACgCGGCCCAGGg-- -3'
miRNA:   3'- cCCCCGagaUgUGgGUCGGGUCCacc -5'
14464 3' -60.6 NC_003521.1 + 238568 0.66 0.811106
Target:  5'- uGGGGGCagUagccgaagacgGCACCCAGCUcguccagcacuagCAGGgccUGGg -3'
miRNA:   3'- -CCCCCGagA-----------UGUGGGUCGG-------------GUCC---ACC- -5'
14464 3' -60.6 NC_003521.1 + 165451 0.66 0.811926
Target:  5'- aGGGGUg--GCagGCCUugAGCaCCAGGUGGc -3'
miRNA:   3'- cCCCCGagaUG--UGGG--UCG-GGUCCACC- -5'
14464 3' -60.6 NC_003521.1 + 238814 0.66 0.811926
Target:  5'- uGGGGCgcgACGCCguGUCCcuGGGUGu -3'
miRNA:   3'- cCCCCGagaUGUGGguCGGG--UCCACc -5'
14464 3' -60.6 NC_003521.1 + 115642 0.66 0.820045
Target:  5'- aGGGGCUCgugcgugucgGCGcCCCAGUggCGGGUGa -3'
miRNA:   3'- cCCCCGAGa---------UGU-GGGUCGg-GUCCACc -5'
14464 3' -60.6 NC_003521.1 + 76533 0.67 0.760454
Target:  5'- -aGGGC-CUGCGCCguCAGCCCGcGGUaguGGa -3'
miRNA:   3'- ccCCCGaGAUGUGG--GUCGGGU-CCA---CC- -5'
14464 3' -60.6 NC_003521.1 + 105628 0.68 0.695986
Target:  5'- aGGGcGuGCUCggGCgugugcgugaaGCCCAGCUCggGGGUGGg -3'
miRNA:   3'- -CCC-C-CGAGa-UG-----------UGGGUCGGG--UCCACC- -5'
14464 3' -60.6 NC_003521.1 + 120236 0.69 0.677032
Target:  5'- --uGGCagUGCAUCCGGCCgaAGGUGGa -3'
miRNA:   3'- cccCCGagAUGUGGGUCGGg-UCCACC- -5'
14464 3' -60.6 NC_003521.1 + 135160 0.77 0.2825
Target:  5'- uGGuGGuGUUCUGCGCCaggaAGCCCAGGaUGGu -3'
miRNA:   3'- -CC-CC-CGAGAUGUGGg---UCGGGUCC-ACC- -5'
14464 3' -60.6 NC_003521.1 + 22982 0.75 0.328628
Target:  5'- uGGGGCUCUGCGCCUGGUUgAcGGUGa -3'
miRNA:   3'- cCCCCGAGAUGUGGGUCGGgU-CCACc -5'
14464 3' -60.6 NC_003521.1 + 27513 0.73 0.428295
Target:  5'- gGGGGGCg-UGCgGCCCGaggcGCCCAcGGUGGc -3'
miRNA:   3'- -CCCCCGagAUG-UGGGU----CGGGU-CCACC- -5'
14464 3' -60.6 NC_003521.1 + 121794 0.72 0.479926
Target:  5'- aGGuGGCgguacUUGCGCUCGGCCguGGUGGg -3'
miRNA:   3'- cCC-CCGa----GAUGUGGGUCGGguCCACC- -5'
14464 3' -60.6 NC_003521.1 + 91444 0.71 0.547457
Target:  5'- uGGGGGCUUUcuaugcgcgcauacGCGCgCAGCUCgcggguguaugcguGGGUGGg -3'
miRNA:   3'- -CCCCCGAGA--------------UGUGgGUCGGG--------------UCCACC- -5'
14464 3' -60.6 NC_003521.1 + 78474 0.71 0.547457
Target:  5'- gGGGGGCUgcGCGCCCAcGCCCgcagucgccgccugcGGGUa- -3'
miRNA:   3'- -CCCCCGAgaUGUGGGU-CGGG---------------UCCAcc -5'
14464 3' -60.6 NC_003521.1 + 110009 0.7 0.600474
Target:  5'- aGGcGGGagaUgUGCACCCGGCUCucGUGGg -3'
miRNA:   3'- -CC-CCCg--AgAUGUGGGUCGGGucCACC- -5'
14464 3' -60.6 NC_003521.1 + 44366 0.69 0.667502
Target:  5'- uGGGGCUgCggcccACGCCCgaGGCCgAGGUGc -3'
miRNA:   3'- cCCCCGA-Ga----UGUGGG--UCGGgUCCACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.