miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14464 3' -60.6 NC_003521.1 + 95197 0.67 0.769326
Target:  5'- cGGaaCUCcACGCCCGGCaCCGGGUGc -3'
miRNA:   3'- cCCccGAGaUGUGGGUCG-GGUCCACc -5'
14464 3' -60.6 NC_003521.1 + 107797 0.67 0.769326
Target:  5'- uGGGGGCUgCUgAUACUguGCC--GGUGGc -3'
miRNA:   3'- -CCCCCGA-GA-UGUGGguCGGguCCACC- -5'
14464 3' -60.6 NC_003521.1 + 76533 0.67 0.760454
Target:  5'- -aGGGC-CUGCGCCguCAGCCCGcGGUaguGGa -3'
miRNA:   3'- ccCCCGaGAUGUGG--GUCGGGU-CCA---CC- -5'
14464 3' -60.6 NC_003521.1 + 22354 0.67 0.760454
Target:  5'- cGGGGCcaCUGCGCCCAcGgCguGGUGc -3'
miRNA:   3'- cCCCCGa-GAUGUGGGU-CgGguCCACc -5'
14464 3' -60.6 NC_003521.1 + 202337 0.67 0.755083
Target:  5'- cGGGGCUCgaguaagaacgccgGCGCCCaccgccagAGCCCAGacGGu -3'
miRNA:   3'- cCCCCGAGa-------------UGUGGG--------UCGGGUCcaCC- -5'
14464 3' -60.6 NC_003521.1 + 144893 0.67 0.751483
Target:  5'- -aGGGCUCUG-AUCCGGCUCGGGa-- -3'
miRNA:   3'- ccCCCGAGAUgUGGGUCGGGUCCacc -5'
14464 3' -60.6 NC_003521.1 + 127745 0.67 0.751483
Target:  5'- cGGcGGCcgUCUGCGCCUcguAGCCCggaAGGUGc -3'
miRNA:   3'- cCC-CCG--AGAUGUGGG---UCGGG---UCCACc -5'
14464 3' -60.6 NC_003521.1 + 191246 0.68 0.732353
Target:  5'- aGGaGGCg--GCGCCgCGGCCCacgcggcAGGUGGu -3'
miRNA:   3'- cCC-CCGagaUGUGG-GUCGGG-------UCCACC- -5'
14464 3' -60.6 NC_003521.1 + 168164 0.68 0.724047
Target:  5'- aGGGGCgc--CGCCCAgGCCCAucGUGGa -3'
miRNA:   3'- cCCCCGagauGUGGGU-CGGGUc-CACC- -5'
14464 3' -60.6 NC_003521.1 + 105628 0.68 0.695986
Target:  5'- aGGGcGuGCUCggGCgugugcgugaaGCCCAGCUCggGGGUGGg -3'
miRNA:   3'- -CCC-C-CGAGa-UG-----------UGGGUCGGG--UCCACC- -5'
14464 3' -60.6 NC_003521.1 + 175390 0.68 0.694098
Target:  5'- cGGGGacccaugACCCGGCgCAGGUGGg -3'
miRNA:   3'- cCCCCgagaug-UGGGUCGgGUCCACC- -5'
14464 3' -60.6 NC_003521.1 + 150263 0.69 0.677032
Target:  5'- aGGGGGCg--GUACCCAcuccuCCCAGGUGu -3'
miRNA:   3'- -CCCCCGagaUGUGGGUc----GGGUCCACc -5'
14464 3' -60.6 NC_003521.1 + 120236 0.69 0.677032
Target:  5'- --uGGCagUGCAUCCGGCCgaAGGUGGa -3'
miRNA:   3'- cccCCGagAUGUGGGUCGGg-UCCACC- -5'
14464 3' -60.6 NC_003521.1 + 44366 0.69 0.667502
Target:  5'- uGGGGCUgCggcccACGCCCgaGGCCgAGGUGc -3'
miRNA:   3'- cCCCCGA-Ga----UGUGGG--UCGGgUCCACc -5'
14464 3' -60.6 NC_003521.1 + 54337 0.69 0.638791
Target:  5'- cGGGGCUCU-CGCCCugGGCCacucggGGcGUGGc -3'
miRNA:   3'- cCCCCGAGAuGUGGG--UCGGg-----UC-CACC- -5'
14464 3' -60.6 NC_003521.1 + 200384 0.7 0.627285
Target:  5'- -cGGGCUagagcgcgcgaGCACCUGGCCguGGUGGa -3'
miRNA:   3'- ccCCCGAga---------UGUGGGUCGGguCCACC- -5'
14464 3' -60.6 NC_003521.1 + 206614 0.7 0.610038
Target:  5'- cGGGcGCcgUCUACGCC--GCCCuGGUGGg -3'
miRNA:   3'- cCCC-CG--AGAUGUGGguCGGGuCCACC- -5'
14464 3' -60.6 NC_003521.1 + 227217 0.7 0.60621
Target:  5'- -aGGGCUacgaagagcccgGCACCCaccAGaCCCAGGUGGa -3'
miRNA:   3'- ccCCCGAga----------UGUGGG---UC-GGGUCCACC- -5'
14464 3' -60.6 NC_003521.1 + 110009 0.7 0.600474
Target:  5'- aGGcGGGagaUgUGCACCCGGCUCucGUGGg -3'
miRNA:   3'- -CC-CCCg--AgAUGUGGGUCGGGucCACC- -5'
14464 3' -60.6 NC_003521.1 + 218774 0.7 0.581414
Target:  5'- uGGGGUgUCUGCGUCCGGCUCugacuucuGGGUGGg -3'
miRNA:   3'- cCCCCG-AGAUGUGGGUCGGG--------UCCACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.