miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14464 5' -56.3 NC_003521.1 + 112655 1.03 0.008268
Target:  5'- cUACCACCUGGCCCAGAUGGAGAACUUc -3'
miRNA:   3'- -AUGGUGGACCGGGUCUACCUCUUGAA- -5'
14464 5' -56.3 NC_003521.1 + 73560 0.76 0.399445
Target:  5'- aACCACCUGGCCguGGUGcGGGcGCUg -3'
miRNA:   3'- aUGGUGGACCGGguCUAC-CUCuUGAa -5'
14464 5' -56.3 NC_003521.1 + 64669 0.76 0.434192
Target:  5'- cUGCCACCgGGCUCcgaggAGAUGGAGAACc- -3'
miRNA:   3'- -AUGGUGGaCCGGG-----UCUACCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 228898 0.75 0.461371
Target:  5'- cACCAgCCgGGCCCGGcUGGGGGACUc -3'
miRNA:   3'- aUGGU-GGaCCGGGUCuACCUCUUGAa -5'
14464 5' -56.3 NC_003521.1 + 114688 0.72 0.648663
Target:  5'- cGCCGCCUGGCCCuacGUGGGucGCg- -3'
miRNA:   3'- aUGGUGGACCGGGuc-UACCUcuUGaa -5'
14464 5' -56.3 NC_003521.1 + 36702 0.72 0.658811
Target:  5'- cGgCGCCUGGCCCgagcAGGUGGAGGcGCa- -3'
miRNA:   3'- aUgGUGGACCGGG----UCUACCUCU-UGaa -5'
14464 5' -56.3 NC_003521.1 + 200399 0.71 0.689095
Target:  5'- gAgCACCUGGCCguGGUGGAcAGCa- -3'
miRNA:   3'- aUgGUGGACCGGguCUACCUcUUGaa -5'
14464 5' -56.3 NC_003521.1 + 137605 0.71 0.718959
Target:  5'- cGCCGCCUGGCcggcgaccucauCCAGGucaUGGAGcGCUa -3'
miRNA:   3'- aUGGUGGACCG------------GGUCU---ACCUCuUGAa -5'
14464 5' -56.3 NC_003521.1 + 94291 0.7 0.738516
Target:  5'- cGCCGCCggagGGaCCCGGGUGGAGc---- -3'
miRNA:   3'- aUGGUGGa---CC-GGGUCUACCUCuugaa -5'
14464 5' -56.3 NC_003521.1 + 66776 0.7 0.757707
Target:  5'- aUGCCGCC-GGCCCAGAcGGAcGGuucGCUg -3'
miRNA:   3'- -AUGGUGGaCCGGGUCUaCCU-CU---UGAa -5'
14464 5' -56.3 NC_003521.1 + 16813 0.7 0.757707
Target:  5'- gACCGCCgGGCCCgccgcugccgcaGGA-GGAGGACa- -3'
miRNA:   3'- aUGGUGGaCCGGG------------UCUaCCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 16890 0.7 0.757707
Target:  5'- gGCCAUCUGGaggAGGUGGAGGACg- -3'
miRNA:   3'- aUGGUGGACCgggUCUACCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 128173 0.7 0.767143
Target:  5'- -uCCAUCUGGgCCAGGUGGuAGAcgcGCUUc -3'
miRNA:   3'- auGGUGGACCgGGUCUACC-UCU---UGAA- -5'
14464 5' -56.3 NC_003521.1 + 100707 0.69 0.77646
Target:  5'- cGCCGCCgcGGCCgCuGAUGGAGGAg-- -3'
miRNA:   3'- aUGGUGGa-CCGG-GuCUACCUCUUgaa -5'
14464 5' -56.3 NC_003521.1 + 236324 0.69 0.77646
Target:  5'- uUACuCAUCggGGCCCGGAcgggGGAGGACg- -3'
miRNA:   3'- -AUG-GUGGa-CCGGGUCUa---CCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 117397 0.69 0.77646
Target:  5'- cACgCGCugugCUGGCaCCGGGUGGAGGGCg- -3'
miRNA:   3'- aUG-GUG----GACCG-GGUCUACCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 233713 0.69 0.794704
Target:  5'- -uCCACCUcagcGGCCUGGAgaaGGAGGACg- -3'
miRNA:   3'- auGGUGGA----CCGGGUCUa--CCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 8625 0.69 0.803613
Target:  5'- cACCACCcgcgggGGCCCAuGGcgugGGAGGACg- -3'
miRNA:   3'- aUGGUGGa-----CCGGGU-CUa---CCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 77271 0.69 0.803613
Target:  5'- cGCCGCCgGGCaCCAGcaggGUGGAGuAGCa- -3'
miRNA:   3'- aUGGUGGaCCG-GGUC----UACCUC-UUGaa -5'
14464 5' -56.3 NC_003521.1 + 148966 0.68 0.832709
Target:  5'- cGCCGuCCUGGUCCgccgcccuggaggggGGAUGGgAGAGCa- -3'
miRNA:   3'- aUGGU-GGACCGGG---------------UCUACC-UCUUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.