miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14464 5' -56.3 NC_003521.1 + 87349 0.66 0.926535
Target:  5'- gGCCcgaGCCggagcccgaggaggaGGCCgAGGUGGAGGACg- -3'
miRNA:   3'- aUGG---UGGa--------------CCGGgUCUACCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 175914 0.67 0.875977
Target:  5'- cUGCUggggACCUGGCCCgaGGAgccggaGGAGGACa- -3'
miRNA:   3'- -AUGG----UGGACCGGG--UCUa-----CCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 239835 0.67 0.889849
Target:  5'- gUACgGCC-GGCCCAGcgGGAGcaGACc- -3'
miRNA:   3'- -AUGgUGGaCCGGGUCuaCCUC--UUGaa -5'
14464 5' -56.3 NC_003521.1 + 36772 0.67 0.896451
Target:  5'- gACgCGCgUGGCCUGGcgggcGUGGAGGACg- -3'
miRNA:   3'- aUG-GUGgACCGGGUC-----UACCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 168115 0.67 0.902826
Target:  5'- cACgCGCCcggGGUCCuGGUGGaAGAACUUg -3'
miRNA:   3'- aUG-GUGGa--CCGGGuCUACC-UCUUGAA- -5'
14464 5' -56.3 NC_003521.1 + 84878 0.66 0.908971
Target:  5'- gGCCGCCcGGUCCGGGUGGcgcGAGu-- -3'
miRNA:   3'- aUGGUGGaCCGGGUCUACCu--CUUgaa -5'
14464 5' -56.3 NC_003521.1 + 157180 0.66 0.908971
Target:  5'- gUGCCgcACCUGcaagagagaaGCCCGGGUGG-GAGCg- -3'
miRNA:   3'- -AUGG--UGGAC----------CGGGUCUACCuCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 120736 0.66 0.920561
Target:  5'- gGCCACCaggGGCaCCAGGUGGccgccuGGAUg- -3'
miRNA:   3'- aUGGUGGa--CCG-GGUCUACCu-----CUUGaa -5'
14464 5' -56.3 NC_003521.1 + 83374 0.66 0.926004
Target:  5'- gAUCugCUGGCCCAacaGAgGGAGgGACUc -3'
miRNA:   3'- aUGGugGACCGGGU---CUaCCUC-UUGAa -5'
14464 5' -56.3 NC_003521.1 + 29063 0.67 0.875977
Target:  5'- aACgACCUGGCCUuccuGGUGGGcaucGAGCUc -3'
miRNA:   3'- aUGgUGGACCGGGu---CUACCU----CUUGAa -5'
14464 5' -56.3 NC_003521.1 + 201074 0.68 0.861246
Target:  5'- -uCCugCUGGCgCAGAUccccguggaacGGAGAACg- -3'
miRNA:   3'- auGGugGACCGgGUCUA-----------CCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 56442 0.68 0.845699
Target:  5'- gGCCGCCucgUGGCCCAGGUccGAGAGg-- -3'
miRNA:   3'- aUGGUGG---ACCGGGUCUAc-CUCUUgaa -5'
14464 5' -56.3 NC_003521.1 + 73560 0.76 0.399445
Target:  5'- aACCACCUGGCCguGGUGcGGGcGCUg -3'
miRNA:   3'- aUGGUGGACCGGguCUAC-CUCuUGAa -5'
14464 5' -56.3 NC_003521.1 + 64669 0.76 0.434192
Target:  5'- cUGCCACCgGGCUCcgaggAGAUGGAGAACc- -3'
miRNA:   3'- -AUGGUGGaCCGGG-----UCUACCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 228898 0.75 0.461371
Target:  5'- cACCAgCCgGGCCCGGcUGGGGGACUc -3'
miRNA:   3'- aUGGU-GGaCCGGGUCuACCUCUUGAa -5'
14464 5' -56.3 NC_003521.1 + 114688 0.72 0.648663
Target:  5'- cGCCGCCUGGCCCuacGUGGGucGCg- -3'
miRNA:   3'- aUGGUGGACCGGGuc-UACCUcuUGaa -5'
14464 5' -56.3 NC_003521.1 + 66776 0.7 0.757707
Target:  5'- aUGCCGCC-GGCCCAGAcGGAcGGuucGCUg -3'
miRNA:   3'- -AUGGUGGaCCGGGUCUaCCU-CU---UGAa -5'
14464 5' -56.3 NC_003521.1 + 100707 0.69 0.77646
Target:  5'- cGCCGCCgcGGCCgCuGAUGGAGGAg-- -3'
miRNA:   3'- aUGGUGGa-CCGG-GuCUACCUCUUgaa -5'
14464 5' -56.3 NC_003521.1 + 233713 0.69 0.794704
Target:  5'- -uCCACCUcagcGGCCUGGAgaaGGAGGACg- -3'
miRNA:   3'- auGGUGGA----CCGGGUCUa--CCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 77271 0.69 0.803613
Target:  5'- cGCCGCCgGGCaCCAGcaggGUGGAGuAGCa- -3'
miRNA:   3'- aUGGUGGaCCG-GGUC----UACCUC-UUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.