miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14464 5' -56.3 NC_003521.1 + 100707 0.69 0.77646
Target:  5'- cGCCGCCgcGGCCgCuGAUGGAGGAg-- -3'
miRNA:   3'- aUGGUGGa-CCGG-GuCUACCUCUUgaa -5'
14464 5' -56.3 NC_003521.1 + 109787 0.66 0.920561
Target:  5'- cGCCGCCgccGCCCAGGagacgggacgUGGAGGAg-- -3'
miRNA:   3'- aUGGUGGac-CGGGUCU----------ACCUCUUgaa -5'
14464 5' -56.3 NC_003521.1 + 111266 0.67 0.88578
Target:  5'- aGCCAUCgucgGGCCCgccGugccagcgccgccgcGAUGGAGAACUg -3'
miRNA:   3'- aUGGUGGa---CCGGG---U---------------CUACCUCUUGAa -5'
14464 5' -56.3 NC_003521.1 + 111860 0.66 0.908971
Target:  5'- cGCCGCCguacuucgUGGUgCAGAcgcuggUGGAGAACg- -3'
miRNA:   3'- aUGGUGG--------ACCGgGUCU------ACCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 112655 1.03 0.008268
Target:  5'- cUACCACCUGGCCCAGAUGGAGAACUUc -3'
miRNA:   3'- -AUGGUGGACCGGGUCUACCUCUUGAA- -5'
14464 5' -56.3 NC_003521.1 + 113324 0.66 0.936181
Target:  5'- gACCugCUGGgCCAaGAcgccGGGGGGCUUc -3'
miRNA:   3'- aUGGugGACCgGGU-CUa---CCUCUUGAA- -5'
14464 5' -56.3 NC_003521.1 + 114688 0.72 0.648663
Target:  5'- cGCCGCCUGGCCCuacGUGGGucGCg- -3'
miRNA:   3'- aUGGUGGACCGGGuc-UACCUcuUGaa -5'
14464 5' -56.3 NC_003521.1 + 117195 0.66 0.936181
Target:  5'- cUGCCGCC--GCCCGaggcGGUGGAGAugUc -3'
miRNA:   3'- -AUGGUGGacCGGGU----CUACCUCUugAa -5'
14464 5' -56.3 NC_003521.1 + 117397 0.69 0.77646
Target:  5'- cACgCGCugugCUGGCaCCGGGUGGAGGGCg- -3'
miRNA:   3'- aUG-GUG----GACCG-GGUCUACCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 120736 0.66 0.920561
Target:  5'- gGCCACCaggGGCaCCAGGUGGccgccuGGAUg- -3'
miRNA:   3'- aUGGUGGa--CCG-GGUCUACCu-----CUUGaa -5'
14464 5' -56.3 NC_003521.1 + 127081 0.66 0.914883
Target:  5'- gGCCACCgacgagaggcGGCCCAGcccguguucguaGUGGaAGAGCa- -3'
miRNA:   3'- aUGGUGGa---------CCGGGUC------------UACC-UCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 128173 0.7 0.767143
Target:  5'- -uCCAUCUGGgCCAGGUGGuAGAcgcGCUUc -3'
miRNA:   3'- auGGUGGACCgGGUCUACC-UCU---UGAA- -5'
14464 5' -56.3 NC_003521.1 + 128201 0.66 0.936181
Target:  5'- -uCCACCUGGgCUGGGUGuAGAGCc- -3'
miRNA:   3'- auGGUGGACCgGGUCUACcUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 137605 0.71 0.718959
Target:  5'- cGCCGCCUGGCcggcgaccucauCCAGGucaUGGAGcGCUa -3'
miRNA:   3'- aUGGUGGACCG------------GGUCU---ACCUCuUGAa -5'
14464 5' -56.3 NC_003521.1 + 139237 0.66 0.935694
Target:  5'- cUACCACCUGuacggggcuccucGCgCGGAgcgGGGGGACg- -3'
miRNA:   3'- -AUGGUGGAC-------------CGgGUCUa--CCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 148966 0.68 0.832709
Target:  5'- cGCCGuCCUGGUCCgccgcccuggaggggGGAUGGgAGAGCa- -3'
miRNA:   3'- aUGGU-GGACCGGG---------------UCUACC-UCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 157180 0.66 0.908971
Target:  5'- gUGCCgcACCUGcaagagagaaGCCCGGGUGG-GAGCg- -3'
miRNA:   3'- -AUGG--UGGAC----------CGGGUCUACCuCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 168115 0.67 0.902826
Target:  5'- cACgCGCCcggGGUCCuGGUGGaAGAACUUg -3'
miRNA:   3'- aUG-GUGGa--CCGGGuCUACC-UCUUGAA- -5'
14464 5' -56.3 NC_003521.1 + 175914 0.67 0.875977
Target:  5'- cUGCUggggACCUGGCCCgaGGAgccggaGGAGGACa- -3'
miRNA:   3'- -AUGG----UGGACCGGG--UCUa-----CCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 200399 0.71 0.689095
Target:  5'- gAgCACCUGGCCguGGUGGAcAGCa- -3'
miRNA:   3'- aUgGUGGACCGGguCUACCUcUUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.