miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14465 3' -58.8 NC_003521.1 + 80040 0.66 0.906676
Target:  5'- cUUGuuGCUGCU--GUUGUCCUCGg- -3'
miRNA:   3'- cAGCggCGGCGAagCAGCAGGAGCag -5'
14465 3' -58.8 NC_003521.1 + 233740 0.66 0.906676
Target:  5'- -aCGCCGCCGCcgCGUCugcuUCUUC-UCa -3'
miRNA:   3'- caGCGGCGGCGaaGCAGc---AGGAGcAG- -5'
14465 3' -58.8 NC_003521.1 + 105328 0.66 0.903141
Target:  5'- -aCGUCGCCGCUUucgguuuuaugugcgCGccacugCGUCCgCGUCg -3'
miRNA:   3'- caGCGGCGGCGAA---------------GCa-----GCAGGaGCAG- -5'
14465 3' -58.8 NC_003521.1 + 154390 0.66 0.901345
Target:  5'- gGUCGCCGCUGCcgccaaucaggaggCGggcacgcgCGUCCcccgCGUCg -3'
miRNA:   3'- -CAGCGGCGGCGaa------------GCa-------GCAGGa---GCAG- -5'
14465 3' -58.8 NC_003521.1 + 118021 0.66 0.900742
Target:  5'- uGUCGCUGCCGCgggacUCGgugcugggaCGUCuguauuucauCUCGUCc -3'
miRNA:   3'- -CAGCGGCGGCGa----AGCa--------GCAG----------GAGCAG- -5'
14465 3' -58.8 NC_003521.1 + 166045 0.66 0.900742
Target:  5'- -cCGCUGCCGCcgUCGUCauacUCCagccaCGUCg -3'
miRNA:   3'- caGCGGCGGCGa-AGCAGc---AGGa----GCAG- -5'
14465 3' -58.8 NC_003521.1 + 221767 0.66 0.900742
Target:  5'- cGUCuG-CGCCGCgcCGcCGUCCUCGa- -3'
miRNA:   3'- -CAG-CgGCGGCGaaGCaGCAGGAGCag -5'
14465 3' -58.8 NC_003521.1 + 143189 0.66 0.900742
Target:  5'- -gCGCCGCCGCgaaCGUCGagCCUg--- -3'
miRNA:   3'- caGCGGCGGCGaa-GCAGCa-GGAgcag -5'
14465 3' -58.8 NC_003521.1 + 121010 0.66 0.900742
Target:  5'- --aGCCGCUGCUccagaccuccUCGgcggCGccgaCCUCGUCg -3'
miRNA:   3'- cagCGGCGGCGA----------AGCa---GCa---GGAGCAG- -5'
14465 3' -58.8 NC_003521.1 + 188315 0.66 0.898921
Target:  5'- uUCGCCG-CGCUcucuaccgcccaccUUGUCGUCgUCGcCg -3'
miRNA:   3'- cAGCGGCgGCGA--------------AGCAGCAGgAGCaG- -5'
14465 3' -58.8 NC_003521.1 + 210904 0.66 0.8946
Target:  5'- cGUCGCCaggcccuugacgGCCaCgggUCGUCGgUCgUCGUCg -3'
miRNA:   3'- -CAGCGG------------CGGcGa--AGCAGC-AGgAGCAG- -5'
14465 3' -58.8 NC_003521.1 + 97413 0.66 0.8946
Target:  5'- cGUCGCCGUCGguaccaucucccCUcCGUC-UCCUcCGUCg -3'
miRNA:   3'- -CAGCGGCGGC------------GAaGCAGcAGGA-GCAG- -5'
14465 3' -58.8 NC_003521.1 + 212987 0.66 0.8946
Target:  5'- --aGaCCGCgGCUggaCGaacaCGUCCUCGUCg -3'
miRNA:   3'- cagC-GGCGgCGAa--GCa---GCAGGAGCAG- -5'
14465 3' -58.8 NC_003521.1 + 5867 0.66 0.893974
Target:  5'- cGUUGguCCGCagGCUggagccgUCGUCGUCCUCGc- -3'
miRNA:   3'- -CAGC--GGCGg-CGA-------AGCAGCAGGAGCag -5'
14465 3' -58.8 NC_003521.1 + 212681 0.66 0.892717
Target:  5'- gGUCGCCGCCgucgccagggcaagGCUgguggGUCGggCCUCGaUCu -3'
miRNA:   3'- -CAGCGGCGG--------------CGAag---CAGCa-GGAGC-AG- -5'
14465 3' -58.8 NC_003521.1 + 188778 0.66 0.888252
Target:  5'- -cUGCCGCUGCUgcUCGUCuggGUCCcCGcCa -3'
miRNA:   3'- caGCGGCGGCGA--AGCAG---CAGGaGCaG- -5'
14465 3' -58.8 NC_003521.1 + 192531 0.66 0.888252
Target:  5'- -aCGUCGaagaCGUgUCGUCGUCCUC-UCu -3'
miRNA:   3'- caGCGGCg---GCGaAGCAGCAGGAGcAG- -5'
14465 3' -58.8 NC_003521.1 + 197197 0.66 0.888252
Target:  5'- --gGCCGCCGCcUCc---UCCUCGUCc -3'
miRNA:   3'- cagCGGCGGCGaAGcagcAGGAGCAG- -5'
14465 3' -58.8 NC_003521.1 + 27024 0.66 0.888252
Target:  5'- uGUgGCugCGCCGUUUCGgCGUCCacaugcgCGUCu -3'
miRNA:   3'- -CAgCG--GCGGCGAAGCaGCAGGa------GCAG- -5'
14465 3' -58.8 NC_003521.1 + 205030 0.66 0.888252
Target:  5'- -aCGCCGCCGUa--GUCGgCCUUcggGUCg -3'
miRNA:   3'- caGCGGCGGCGaagCAGCaGGAG---CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.