miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14465 3' -58.8 NC_003521.1 + 174 0.67 0.86801
Target:  5'- --gGCCGCCGCUUCGg---CCUCc-- -3'
miRNA:   3'- cagCGGCGGCGAAGCagcaGGAGcag -5'
14465 3' -58.8 NC_003521.1 + 3655 0.68 0.789057
Target:  5'- -cCGCCGCCGuCUgccUCGgcggcCGggacCCUCGUCg -3'
miRNA:   3'- caGCGGCGGC-GA---AGCa----GCa---GGAGCAG- -5'
14465 3' -58.8 NC_003521.1 + 5553 0.71 0.620418
Target:  5'- --gGCCGCCGCcaUCGUUGUUC-CGUCc -3'
miRNA:   3'- cagCGGCGGCGa-AGCAGCAGGaGCAG- -5'
14465 3' -58.8 NC_003521.1 + 5867 0.66 0.893974
Target:  5'- cGUUGguCCGCagGCUggagccgUCGUCGUCCUCGc- -3'
miRNA:   3'- -CAGC--GGCGg-CGA-------AGCAGCAGGAGCag -5'
14465 3' -58.8 NC_003521.1 + 5996 0.8 0.239396
Target:  5'- aUCGCCGUCcCcgUCGUCGUCUUCGUCa -3'
miRNA:   3'- cAGCGGCGGcGa-AGCAGCAGGAGCAG- -5'
14465 3' -58.8 NC_003521.1 + 7194 0.67 0.86801
Target:  5'- -gCGCCGCCGCUgaaaUUGcCCUCGa- -3'
miRNA:   3'- caGCGGCGGCGAagc-AGCaGGAGCag -5'
14465 3' -58.8 NC_003521.1 + 22117 0.67 0.838388
Target:  5'- -cCGCCGCCGCcgcCGUC-UCCUCc-- -3'
miRNA:   3'- caGCGGCGGCGaa-GCAGcAGGAGcag -5'
14465 3' -58.8 NC_003521.1 + 22748 0.66 0.888252
Target:  5'- -gCGCCGCCGCcUCGcUGUgCUUCGa- -3'
miRNA:   3'- caGCGGCGGCGaAGCaGCA-GGAGCag -5'
14465 3' -58.8 NC_003521.1 + 27024 0.66 0.888252
Target:  5'- uGUgGCugCGCCGUUUCGgCGUCCacaugcgCGUCu -3'
miRNA:   3'- -CAgCG--GCGGCGAAGCaGCAGGa------GCAG- -5'
14465 3' -58.8 NC_003521.1 + 32494 0.76 0.394361
Target:  5'- cGUCGUCGCCGCgacaGUCGUCCagGUa -3'
miRNA:   3'- -CAGCGGCGGCGaag-CAGCAGGagCAg -5'
14465 3' -58.8 NC_003521.1 + 37008 0.66 0.881036
Target:  5'- -gCGUCGCgGCggaGUCaggaccgacaggaGUCCUCGUCg -3'
miRNA:   3'- caGCGGCGgCGaagCAG-------------CAGGAGCAG- -5'
14465 3' -58.8 NC_003521.1 + 39292 0.67 0.860153
Target:  5'- cGUCGCCGgCGCcguagcggaaccaUUCGUCGg---CGUCg -3'
miRNA:   3'- -CAGCGGCgGCG-------------AAGCAGCaggaGCAG- -5'
14465 3' -58.8 NC_003521.1 + 41335 0.66 0.880368
Target:  5'- aUCGCCGCCGaucgcuaucgCGUCaUCCacCGUCg -3'
miRNA:   3'- cAGCGGCGGCgaa-------GCAGcAGGa-GCAG- -5'
14465 3' -58.8 NC_003521.1 + 43281 0.76 0.378576
Target:  5'- cUCGCCGCCGCUcUCGUCcgccgacUCCUCGa- -3'
miRNA:   3'- cAGCGGCGGCGA-AGCAGc------AGGAGCag -5'
14465 3' -58.8 NC_003521.1 + 44111 0.68 0.806084
Target:  5'- cGUCGCCGCCGgUgaaGUCGg-C-CGUCg -3'
miRNA:   3'- -CAGCGGCGGCgAag-CAGCagGaGCAG- -5'
14465 3' -58.8 NC_003521.1 + 44241 0.69 0.735183
Target:  5'- -cUGCCGCCGUgcgCGggaGUCCggCGUCa -3'
miRNA:   3'- caGCGGCGGCGaa-GCag-CAGGa-GCAG- -5'
14465 3' -58.8 NC_003521.1 + 45395 0.69 0.738883
Target:  5'- aUCgGCCGCCuCUUCGUCGgccguggccuccaccUCCUCGg- -3'
miRNA:   3'- cAG-CGGCGGcGAAGCAGC---------------AGGAGCag -5'
14465 3' -58.8 NC_003521.1 + 47740 0.68 0.81767
Target:  5'- -aCGCCGCUGUcgaugaagaaauggUCGUCGUCCUgacgCGUg -3'
miRNA:   3'- caGCGGCGGCGa-------------AGCAGCAGGA----GCAg -5'
14465 3' -58.8 NC_003521.1 + 47973 0.67 0.86801
Target:  5'- aGUCGCggCGUCGCUUC-UCGUCCaCGg- -3'
miRNA:   3'- -CAGCG--GCGGCGAAGcAGCAGGaGCag -5'
14465 3' -58.8 NC_003521.1 + 48380 0.68 0.813565
Target:  5'- -gCGCCGCCGCcaugccccucuccUUCGUCucCCUCGa- -3'
miRNA:   3'- caGCGGCGGCG-------------AAGCAGcaGGAGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.