miRNA display CGI


Results 21 - 40 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14468 3' -54 NC_003521.1 + 99957 0.66 0.978603
Target:  5'- --gGGCGGCGGCGCCucgGCCGagAcCGCg -3'
miRNA:   3'- gagUCGUCGUCGUGG---UGGUagUaGUG- -5'
14468 3' -54 NC_003521.1 + 98996 0.66 0.978603
Target:  5'- gUCAGgGGaGGUACCGCgGUCGUCu- -3'
miRNA:   3'- gAGUCgUCgUCGUGGUGgUAGUAGug -5'
14468 3' -54 NC_003521.1 + 97738 0.66 0.978603
Target:  5'- -cCGGCGGCGGCugCGaauCCGacgUAUCGCc -3'
miRNA:   3'- gaGUCGUCGUCGugGU---GGUa--GUAGUG- -5'
14468 3' -54 NC_003521.1 + 127330 0.66 0.978603
Target:  5'- gUCAGCGGCuGCcggucgGCCACgAUCugCACg -3'
miRNA:   3'- gAGUCGUCGuCG------UGGUGgUAGuaGUG- -5'
14468 3' -54 NC_003521.1 + 165942 0.66 0.978603
Target:  5'- uCUCGcGCAGCAGCGCCGugUCGUgcUCGg -3'
miRNA:   3'- -GAGU-CGUCGUCGUGGU--GGUAguAGUg -5'
14468 3' -54 NC_003521.1 + 28309 0.66 0.978603
Target:  5'- -gCAGCGGCAGCgACC-CCGg---CGCg -3'
miRNA:   3'- gaGUCGUCGUCG-UGGuGGUaguaGUG- -5'
14468 3' -54 NC_003521.1 + 203993 0.66 0.978603
Target:  5'- -cCGGCacAGCAGCGCCGgCCcguggcgcGUgAUCACg -3'
miRNA:   3'- gaGUCG--UCGUCGUGGU-GG--------UAgUAGUG- -5'
14468 3' -54 NC_003521.1 + 184336 0.66 0.978603
Target:  5'- gUCAGCcGCAGUACUGCC-UCuUCGg -3'
miRNA:   3'- gAGUCGuCGUCGUGGUGGuAGuAGUg -5'
14468 3' -54 NC_003521.1 + 77042 0.66 0.978603
Target:  5'- -gCGGUGGUGGCGCCgcuACCGUUGUUGCc -3'
miRNA:   3'- gaGUCGUCGUCGUGG---UGGUAGUAGUG- -5'
14468 3' -54 NC_003521.1 + 132373 0.66 0.978603
Target:  5'- aUCAGCGGCA-CGCCGCaCAcccgcgaggUCAUCcgGCa -3'
miRNA:   3'- gAGUCGUCGUcGUGGUG-GU---------AGUAG--UG- -5'
14468 3' -54 NC_003521.1 + 97216 0.66 0.976217
Target:  5'- -gCAGCAgGCAGCAgCCggugGCCGUCAgcagucCGCg -3'
miRNA:   3'- gaGUCGU-CGUCGU-GG----UGGUAGUa-----GUG- -5'
14468 3' -54 NC_003521.1 + 104028 0.66 0.976217
Target:  5'- gUCGGCgGGCAGCGugaccgugagcCCGCUGUCG-CGCa -3'
miRNA:   3'- gAGUCG-UCGUCGU-----------GGUGGUAGUaGUG- -5'
14468 3' -54 NC_003521.1 + 25989 0.66 0.976217
Target:  5'- --gGGCAGCaaacAGCauggaACCGCCGUCGcCGCg -3'
miRNA:   3'- gagUCGUCG----UCG-----UGGUGGUAGUaGUG- -5'
14468 3' -54 NC_003521.1 + 45419 0.66 0.976217
Target:  5'- -gUAGCcGguGC-CCGCCGUCggCGCg -3'
miRNA:   3'- gaGUCGuCguCGuGGUGGUAGuaGUG- -5'
14468 3' -54 NC_003521.1 + 131402 0.66 0.976217
Target:  5'- gUCAGCcuGGaCcGCAUCGCCGUCAaCGCc -3'
miRNA:   3'- gAGUCG--UC-GuCGUGGUGGUAGUaGUG- -5'
14468 3' -54 NC_003521.1 + 83259 0.66 0.975969
Target:  5'- cCUUGGCgugggggAGCA-CGCCugCGUUAUCGCa -3'
miRNA:   3'- -GAGUCG-------UCGUcGUGGugGUAGUAGUG- -5'
14468 3' -54 NC_003521.1 + 111603 0.66 0.975211
Target:  5'- -cCAGCGGCGccggacuGCccaccacgcgccagACCACCAUCAuggUCACc -3'
miRNA:   3'- gaGUCGUCGU-------CG--------------UGGUGGUAGU---AGUG- -5'
14468 3' -54 NC_003521.1 + 31430 0.66 0.974696
Target:  5'- -gCAGCAggcggaugaugcGCAGCGCCagcacggcguuagaaGCCAgguaCAUCACg -3'
miRNA:   3'- gaGUCGU------------CGUCGUGG---------------UGGUa---GUAGUG- -5'
14468 3' -54 NC_003521.1 + 238083 0.66 0.973643
Target:  5'- -gCAGUAGCAGCAgCCAgCCAgCGagGCg -3'
miRNA:   3'- gaGUCGUCGUCGU-GGU-GGUaGUagUG- -5'
14468 3' -54 NC_003521.1 + 136219 0.66 0.973643
Target:  5'- uCUCAGCGGCGucuacaGCUACC-UCAUgACg -3'
miRNA:   3'- -GAGUCGUCGUcg----UGGUGGuAGUAgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.