miRNA display CGI


Results 21 - 40 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14468 5' -53.7 NC_003521.1 + 104920 0.66 0.987777
Target:  5'- cCGACGacGAUGacGACGAgcgcGaCGCCGUCGGu -3'
miRNA:   3'- -GCUGUa-CUAC--CUGCUa---C-GCGGCAGCU- -5'
14468 5' -53.7 NC_003521.1 + 204742 0.66 0.987777
Target:  5'- gGugGUGAUGGAg---GCGCCGcCGc -3'
miRNA:   3'- gCugUACUACCUgcuaCGCGGCaGCu -5'
14468 5' -53.7 NC_003521.1 + 215028 0.66 0.987777
Target:  5'- uGGCAgcUGAUGGugGGcUGCaGCCG-CGu -3'
miRNA:   3'- gCUGU--ACUACCugCU-ACG-CGGCaGCu -5'
14468 5' -53.7 NC_003521.1 + 202456 0.66 0.98763
Target:  5'- aGGCccugcuaGUGcUGGACGAgcuggGUGCCGUCu- -3'
miRNA:   3'- gCUG-------UACuACCUGCUa----CGCGGCAGcu -5'
14468 5' -53.7 NC_003521.1 + 2228 0.66 0.98763
Target:  5'- aGGCccugcuaGUGcUGGACGAgcuggGUGCCGUCu- -3'
miRNA:   3'- gCUG-------UACuACCUGCUa----CGCGGCAGcu -5'
14468 5' -53.7 NC_003521.1 + 119985 0.67 0.986248
Target:  5'- uCGACGaGccGGGCGAcaUGCGCCGcUGGc -3'
miRNA:   3'- -GCUGUaCuaCCUGCU--ACGCGGCaGCU- -5'
14468 5' -53.7 NC_003521.1 + 65357 0.67 0.986248
Target:  5'- gGACGUGcUGuccggggaGACGgcGCGCCGcCGAu -3'
miRNA:   3'- gCUGUACuAC--------CUGCuaCGCGGCaGCU- -5'
14468 5' -53.7 NC_003521.1 + 214427 0.67 0.984576
Target:  5'- aCGGCGUGGguGACGGUGCuGCagaaGUUGAu -3'
miRNA:   3'- -GCUGUACUacCUGCUACG-CGg---CAGCU- -5'
14468 5' -53.7 NC_003521.1 + 88017 0.67 0.984401
Target:  5'- uGACGUGcGUGGACaGGUGCagcuugaGCuCGUUGAg -3'
miRNA:   3'- gCUGUAC-UACCUG-CUACG-------CG-GCAGCU- -5'
14468 5' -53.7 NC_003521.1 + 13450 0.67 0.982754
Target:  5'- gGACGUcaagcgcaGcGGCGGUaGCGCCGUCGAc -3'
miRNA:   3'- gCUGUAcua-----C-CUGCUA-CGCGGCAGCU- -5'
14468 5' -53.7 NC_003521.1 + 198192 0.67 0.980775
Target:  5'- aGugAUGAUGaauuccauggcGGCGAcgGCGCCGcCGGc -3'
miRNA:   3'- gCugUACUAC-----------CUGCUa-CGCGGCaGCU- -5'
14468 5' -53.7 NC_003521.1 + 137536 0.67 0.978631
Target:  5'- -cGCGUGGUGGccuacgACGAgacgGCGCCGgcCGAg -3'
miRNA:   3'- gcUGUACUACC------UGCUa---CGCGGCa-GCU- -5'
14468 5' -53.7 NC_003521.1 + 59860 0.67 0.978631
Target:  5'- gGGCcgGucaacGGCGAUGUGCCGcCGAg -3'
miRNA:   3'- gCUGuaCuac--CUGCUACGCGGCaGCU- -5'
14468 5' -53.7 NC_003521.1 + 121762 0.67 0.978631
Target:  5'- cCGAC-UGGUGGAUGAUGgUGUCGgccaCGGg -3'
miRNA:   3'- -GCUGuACUACCUGCUAC-GCGGCa---GCU- -5'
14468 5' -53.7 NC_003521.1 + 150928 0.67 0.978631
Target:  5'- aCGGCGUG-UGGGcCGA-GCGCgGUCa- -3'
miRNA:   3'- -GCUGUACuACCU-GCUaCGCGgCAGcu -5'
14468 5' -53.7 NC_003521.1 + 65290 0.67 0.976315
Target:  5'- aCGACAUGcUGGGg---GCGCUGUCGc -3'
miRNA:   3'- -GCUGUACuACCUgcuaCGCGGCAGCu -5'
14468 5' -53.7 NC_003521.1 + 82793 0.67 0.976315
Target:  5'- gGACGaGGUGGACGAcGaagaaGCCGaCGAg -3'
miRNA:   3'- gCUGUaCUACCUGCUaCg----CGGCaGCU- -5'
14468 5' -53.7 NC_003521.1 + 113860 0.67 0.976315
Target:  5'- cCGAgCGUGgcGGugGuguaaGCGCCGUCa- -3'
miRNA:   3'- -GCU-GUACuaCCugCua---CGCGGCAGcu -5'
14468 5' -53.7 NC_003521.1 + 119319 0.68 0.97382
Target:  5'- aGGCG-GAUGG-UGAUGCGCacgcgGUCGGg -3'
miRNA:   3'- gCUGUaCUACCuGCUACGCGg----CAGCU- -5'
14468 5' -53.7 NC_003521.1 + 139803 0.68 0.97382
Target:  5'- uCGGC--GGUGG-CGAaGcCGCCGUCGAg -3'
miRNA:   3'- -GCUGuaCUACCuGCUaC-GCGGCAGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.