miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1447 5' -55.2 NC_001335.1 + 28200 0.66 0.728052
Target:  5'- aCCCugGAGGGcaaCGAGAucGGCGUCu -3'
miRNA:   3'- aGGG--CUCCCuaaGCUCUucCCGUAGc -5'
1447 5' -55.2 NC_001335.1 + 39957 0.66 0.706723
Target:  5'- aCCCGaAGGGAcaUUCGuGGAcgccgcugaucGGGUAUCu -3'
miRNA:   3'- aGGGC-UCCCU--AAGCuCUU-----------CCCGUAGc -5'
1447 5' -55.2 NC_001335.1 + 8919 0.66 0.700264
Target:  5'- aUCCGGGGGucgaucucggcgugcAUUCGGGu-GGGCGgcUCGa -3'
miRNA:   3'- aGGGCUCCC---------------UAAGCUCuuCCCGU--AGC- -5'
1447 5' -55.2 NC_001335.1 + 1693 0.67 0.685103
Target:  5'- gUCCUcgagGAGGGcgcGUUCGGucGGGGUGUCGc -3'
miRNA:   3'- -AGGG----CUCCC---UAAGCUcuUCCCGUAGC- -5'
1447 5' -55.2 NC_001335.1 + 47882 0.67 0.678574
Target:  5'- gUUUCGAGGGAccgaaagacgcugUGGGAcGGGCAUCa -3'
miRNA:   3'- -AGGGCUCCCUaa-----------GCUCUuCCCGUAGc -5'
1447 5' -55.2 NC_001335.1 + 10466 0.68 0.619372
Target:  5'- uUCCgCGAGGaGAccagagaggacUUCGAGAAGuGGCA-CGc -3'
miRNA:   3'- -AGG-GCUCC-CU-----------AAGCUCUUC-CCGUaGC- -5'
1447 5' -55.2 NC_001335.1 + 7602 0.68 0.597444
Target:  5'- cUCCUucugcgGGGGGAUcUCgGAGAccGGGGUGUCGg -3'
miRNA:   3'- -AGGG------CUCCCUA-AG-CUCU--UCCCGUAGC- -5'
1447 5' -55.2 NC_001335.1 + 10807 0.69 0.532631
Target:  5'- aCCCaccuGGGGUUCGAGGgacuacgcagcgAGGGCGUa- -3'
miRNA:   3'- aGGGcu--CCCUAAGCUCU------------UCCCGUAgc -5'
1447 5' -55.2 NC_001335.1 + 35191 0.7 0.490834
Target:  5'- gUUCCG-GGGAa---GGAAGGGCGUCGu -3'
miRNA:   3'- -AGGGCuCCCUaagcUCUUCCCGUAGC- -5'
1447 5' -55.2 NC_001335.1 + 20235 0.7 0.471517
Target:  5'- gUCCGAGGGAUgguccaacuggccggCGAcGGccaggucgAGGGCGUCGa -3'
miRNA:   3'- aGGGCUCCCUAa--------------GCU-CU--------UCCCGUAGC- -5'
1447 5' -55.2 NC_001335.1 + 32816 0.7 0.470511
Target:  5'- aCCCGuGGGuggUCGuGAAGGGUG-CGg -3'
miRNA:   3'- aGGGCuCCCua-AGCuCUUCCCGUaGC- -5'
1447 5' -55.2 NC_001335.1 + 17724 0.7 0.460511
Target:  5'- -gCCGAGGGAUUCGGcAAcGGCAUgGa -3'
miRNA:   3'- agGGCUCCCUAAGCUcUUcCCGUAgC- -5'
1447 5' -55.2 NC_001335.1 + 29670 0.76 0.222684
Target:  5'- -gCCGAGGGGcUUGAGGAgauGGGCGUCa -3'
miRNA:   3'- agGGCUCCCUaAGCUCUU---CCCGUAGc -5'
1447 5' -55.2 NC_001335.1 + 7553 1.1 0.00089
Target:  5'- aUCCCGAGGGAUUCGAGAAGGGCAUCGa -3'
miRNA:   3'- -AGGGCUCCCUAAGCUCUUCCCGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.