miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14470 3' -57.3 NC_003521.1 + 16834 0.66 0.949208
Target:  5'- uGAGGACCgaccGUccUCgCCGGCGcAGGc -3'
miRNA:   3'- gCUCCUGGacu-CAa-AGgGGCCGC-UCC- -5'
14470 3' -57.3 NC_003521.1 + 168447 0.66 0.949208
Target:  5'- aCGAGGACgCcGAGUacgggCUgGGCGAGGc -3'
miRNA:   3'- -GCUCCUG-GaCUCAaag--GGgCCGCUCC- -5'
14470 3' -57.3 NC_003521.1 + 109012 0.66 0.945112
Target:  5'- uGAGGuagUGGG--UCCgCGGCGAGGg -3'
miRNA:   3'- gCUCCuggACUCaaAGGgGCCGCUCC- -5'
14470 3' -57.3 NC_003521.1 + 175389 0.66 0.945112
Target:  5'- aCGGGGACCcaUGA-----CCCGGCGcAGGu -3'
miRNA:   3'- -GCUCCUGG--ACUcaaagGGGCCGC-UCC- -5'
14470 3' -57.3 NC_003521.1 + 141457 0.66 0.940363
Target:  5'- aGAGGugCUGcaGGUggugcgaagccgcUUCUCCGggcGCGAGGu -3'
miRNA:   3'- gCUCCugGAC--UCA-------------AAGGGGC---CGCUCC- -5'
14470 3' -57.3 NC_003521.1 + 35842 0.66 0.936285
Target:  5'- cCGAGGAUgUaGAGUUcaUCgCgGGCGAGa -3'
miRNA:   3'- -GCUCCUGgA-CUCAA--AGgGgCCGCUCc -5'
14470 3' -57.3 NC_003521.1 + 19339 0.67 0.926604
Target:  5'- cCGGGGAgCUccggcGAGgagCCCuCGuGCGAGGa -3'
miRNA:   3'- -GCUCCUgGA-----CUCaaaGGG-GC-CGCUCC- -5'
14470 3' -57.3 NC_003521.1 + 117026 0.67 0.926604
Target:  5'- aCGAGGACCgcgaacGAGgcaUCCUCuGCGuGGu -3'
miRNA:   3'- -GCUCCUGGa-----CUCaa-AGGGGcCGCuCC- -5'
14470 3' -57.3 NC_003521.1 + 236146 0.67 0.926604
Target:  5'- gGGGGACCgcgcGAcg-UCgCCGGCGGGa -3'
miRNA:   3'- gCUCCUGGa---CUcaaAGgGGCCGCUCc -5'
14470 3' -57.3 NC_003521.1 + 121701 0.67 0.921441
Target:  5'- uGAGGuAUCcGAGUUccgaccccagUCgCCCGGCGAGc -3'
miRNA:   3'- gCUCC-UGGaCUCAA----------AG-GGGCCGCUCc -5'
14470 3' -57.3 NC_003521.1 + 143115 0.67 0.921441
Target:  5'- uGAGGACgacGAGUcggCCaccaccgaCGGCGAGGg -3'
miRNA:   3'- gCUCCUGga-CUCAaa-GGg-------GCCGCUCC- -5'
14470 3' -57.3 NC_003521.1 + 164695 0.67 0.920913
Target:  5'- uCGAGGACCUG-GUgcugUCgUCGGUGcuguccaAGGa -3'
miRNA:   3'- -GCUCCUGGACuCAa---AGgGGCCGC-------UCC- -5'
14470 3' -57.3 NC_003521.1 + 188491 0.67 0.904668
Target:  5'- cCGuGGGCCUGGGUccgCCgCCGagauaCGAGGa -3'
miRNA:   3'- -GCuCCUGGACUCAaa-GG-GGCc----GCUCC- -5'
14470 3' -57.3 NC_003521.1 + 167110 0.68 0.898654
Target:  5'- cCGGGGACUgagGAGccUCCCUGGgGAc- -3'
miRNA:   3'- -GCUCCUGGa--CUCaaAGGGGCCgCUcc -5'
14470 3' -57.3 NC_003521.1 + 155310 0.68 0.893064
Target:  5'- uCGGcGuCCUGGGUgagacgaccgcgggUCCCGGCGGGGg -3'
miRNA:   3'- -GCUcCuGGACUCAaa------------GGGGCCGCUCC- -5'
14470 3' -57.3 NC_003521.1 + 223400 0.68 0.892432
Target:  5'- aCGcGGGCCgUGuGgcgCCCCGGCGcGGc -3'
miRNA:   3'- -GCuCCUGG-ACuCaaaGGGGCCGCuCC- -5'
14470 3' -57.3 NC_003521.1 + 148764 0.68 0.892432
Target:  5'- --uGGAUCUGGGUgcCCUCGGCGGu- -3'
miRNA:   3'- gcuCCUGGACUCAaaGGGGCCGCUcc -5'
14470 3' -57.3 NC_003521.1 + 92652 0.68 0.886005
Target:  5'- cCGAGGGucccauccccCCggucGAGcagCCUCGGCGAGGu -3'
miRNA:   3'- -GCUCCU----------GGa---CUCaaaGGGGCCGCUCC- -5'
14470 3' -57.3 NC_003521.1 + 204699 0.68 0.886005
Target:  5'- aCGAGGGCagcGAGgugaccaCCaCGGCGGGGa -3'
miRNA:   3'- -GCUCCUGga-CUCaaag---GG-GCCGCUCC- -5'
14470 3' -57.3 NC_003521.1 + 143396 0.68 0.882052
Target:  5'- cCGuGGACCUGAGcgacgagagcuUUcgccugggccagggcUCCuUCGGCGAGGu -3'
miRNA:   3'- -GCuCCUGGACUC-----------AA---------------AGG-GGCCGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.