miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14470 5' -54.3 NC_003521.1 + 155383 0.66 0.980575
Target:  5'- cGCC-GGCGCGGAcgacGAGGCcggCGGGGGg -3'
miRNA:   3'- cCGGcCCGCGCCUu---UUUCGa--GUUCUU- -5'
14470 5' -54.3 NC_003521.1 + 18094 0.66 0.980575
Target:  5'- cGGCCGcGGgGaCGGAGGAGGUagCGguGGAAa -3'
miRNA:   3'- -CCGGC-CCgC-GCCUUUUUCGa-GU--UCUU- -5'
14470 5' -54.3 NC_003521.1 + 238753 0.66 0.980575
Target:  5'- aGUCGGGC-CGGc-GGAGCUCGacAGAGg -3'
miRNA:   3'- cCGGCCCGcGCCuuUUUCGAGU--UCUU- -5'
14470 5' -54.3 NC_003521.1 + 101797 0.66 0.980575
Target:  5'- aGuuGGGCGCGcacGAAGCcCAGGGGg -3'
miRNA:   3'- cCggCCCGCGCcuuUUUCGaGUUCUU- -5'
14470 5' -54.3 NC_003521.1 + 79807 0.66 0.980575
Target:  5'- uGCCGcGGCgaGCGGAAccugacAGAGgUCGGGAu -3'
miRNA:   3'- cCGGC-CCG--CGCCUU------UUUCgAGUUCUu -5'
14470 5' -54.3 NC_003521.1 + 78203 0.66 0.980575
Target:  5'- cGGagCGGGCGCGGc----GCUCGucGGAGg -3'
miRNA:   3'- -CCg-GCCCGCGCCuuuuuCGAGU--UCUU- -5'
14470 5' -54.3 NC_003521.1 + 43230 0.66 0.980575
Target:  5'- -aCCGGGCaGCGGGGAAGGg-CGAGu- -3'
miRNA:   3'- ccGGCCCG-CGCCUUUUUCgaGUUCuu -5'
14470 5' -54.3 NC_003521.1 + 38526 0.66 0.980575
Target:  5'- aGUCGGGC-CGGc-GGAGCUCGacAGAGg -3'
miRNA:   3'- cCGGCCCGcGCCuuUUUCGAGU--UCUU- -5'
14470 5' -54.3 NC_003521.1 + 14762 0.66 0.980575
Target:  5'- cGGCCgGGGCGCGccuucguGGC-CGAGGu -3'
miRNA:   3'- -CCGG-CCCGCGCcuuuu--UCGaGUUCUu -5'
14470 5' -54.3 NC_003521.1 + 5864 0.66 0.979051
Target:  5'- -uCCGGGCGCGGGcacaggaaacgauGAgucagcggggagagaAGGUUCGGGAGg -3'
miRNA:   3'- ccGGCCCGCGCCU-------------UU---------------UUCGAGUUCUU- -5'
14470 5' -54.3 NC_003521.1 + 36780 0.66 0.978372
Target:  5'- uGGCCuggcGGGCGUGGAGGAcGCgccuuUCGGGc- -3'
miRNA:   3'- -CCGG----CCCGCGCCUUUUuCG-----AGUUCuu -5'
14470 5' -54.3 NC_003521.1 + 55141 0.66 0.978372
Target:  5'- aGGUCGcGGCGCGGAGAgGAGaaaguuauauacCUCGGGc- -3'
miRNA:   3'- -CCGGC-CCGCGCCUUU-UUC------------GAGUUCuu -5'
14470 5' -54.3 NC_003521.1 + 151103 0.66 0.978372
Target:  5'- gGGUCGGGcCGCuGGggGAuGGCggGGGGAa -3'
miRNA:   3'- -CCGGCCC-GCG-CCuuUU-UCGagUUCUU- -5'
14470 5' -54.3 NC_003521.1 + 152099 0.66 0.977676
Target:  5'- cGCCGGcucuGCGaGGAGAcccgucucaaguacGGGCUCGAGAc -3'
miRNA:   3'- cCGGCC----CGCgCCUUU--------------UUCGAGUUCUu -5'
14470 5' -54.3 NC_003521.1 + 122763 0.66 0.975989
Target:  5'- -aCCGGGCaCGGGGAuGGCggcCGAGAGc -3'
miRNA:   3'- ccGGCCCGcGCCUUUuUCGa--GUUCUU- -5'
14470 5' -54.3 NC_003521.1 + 153109 0.66 0.97342
Target:  5'- cGCCGGGCGCGcGcGAcGGCagCAGGc- -3'
miRNA:   3'- cCGGCCCGCGC-CuUUuUCGa-GUUCuu -5'
14470 5' -54.3 NC_003521.1 + 101442 0.66 0.97342
Target:  5'- cGuuGGGCGCGGuGAAcuGCUCGc--- -3'
miRNA:   3'- cCggCCCGCGCC-UUUuuCGAGUucuu -5'
14470 5' -54.3 NC_003521.1 + 148279 0.66 0.97342
Target:  5'- gGGuuGGGggaGgGGAAcgcuggcuGAGGCUCGGGAc -3'
miRNA:   3'- -CCggCCCg--CgCCUU--------UUUCGAGUUCUu -5'
14470 5' -54.3 NC_003521.1 + 238377 0.66 0.970658
Target:  5'- aGCgGGGCGCGGGGAugaacgugcaGGGCgucccagCGGGGc -3'
miRNA:   3'- cCGgCCCGCGCCUUU----------UUCGa------GUUCUu -5'
14470 5' -54.3 NC_003521.1 + 210514 0.66 0.970658
Target:  5'- uGCUGGaGCGCGGucu--GCUgAAGAGc -3'
miRNA:   3'- cCGGCC-CGCGCCuuuuuCGAgUUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.