miRNA display CGI


Results 1 - 20 of 245 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14473 5' -61 NC_003521.1 + 86263 0.66 0.817971
Target:  5'- -cGCGCUGAgGUUCUGCG-CGGCGAUc -3'
miRNA:   3'- guCGUGGCU-CAGGGCGCcGUCGCUGu -5'
14473 5' -61 NC_003521.1 + 201338 0.66 0.817971
Target:  5'- uGGcCACCaucGUCCaCGaGGCGGCGACGg -3'
miRNA:   3'- gUC-GUGGcu-CAGG-GCgCCGUCGCUGU- -5'
14473 5' -61 NC_003521.1 + 1110 0.66 0.817971
Target:  5'- uGGcCACCaucGUCCaCGaGGCGGCGACGg -3'
miRNA:   3'- gUC-GUGGcu-CAGG-GCgCCGUCGCUGU- -5'
14473 5' -61 NC_003521.1 + 191041 0.66 0.817971
Target:  5'- gCAGCgucugcugGCCGAcgcucaguucuGuUCCCGCGGCgaccgugguGGCGGCGg -3'
miRNA:   3'- -GUCG--------UGGCU-----------C-AGGGCGCCG---------UCGCUGU- -5'
14473 5' -61 NC_003521.1 + 104250 0.66 0.817971
Target:  5'- gAGCACCaGGUgCaGCGGCAGCuGCc -3'
miRNA:   3'- gUCGUGGcUCAgGgCGCCGUCGcUGu -5'
14473 5' -61 NC_003521.1 + 44066 0.66 0.817971
Target:  5'- -cGCGCCGG---CCGgGGCAGCaGACGg -3'
miRNA:   3'- guCGUGGCUcagGGCgCCGUCG-CUGU- -5'
14473 5' -61 NC_003521.1 + 39454 0.66 0.817971
Target:  5'- cCGGCGCCGAGggCCGCGucgaaggauuGCGGauCGGCGc -3'
miRNA:   3'- -GUCGUGGCUCagGGCGC----------CGUC--GCUGU- -5'
14473 5' -61 NC_003521.1 + 52129 0.66 0.817971
Target:  5'- gGGCGCCacGGGaCCCGCGuaucccccgcccGuCAGCGACGg -3'
miRNA:   3'- gUCGUGG--CUCaGGGCGC------------C-GUCGCUGU- -5'
14473 5' -61 NC_003521.1 + 163185 0.66 0.817971
Target:  5'- gCGGCAgCGgacacgguGGUggCgGCGGCAGCGGCAg -3'
miRNA:   3'- -GUCGUgGC--------UCAg-GgCGCCGUCGCUGU- -5'
14473 5' -61 NC_003521.1 + 196573 0.66 0.809775
Target:  5'- cCGGCgugacGCCGGacUCCCGCGcaCGGCGGCAa -3'
miRNA:   3'- -GUCG-----UGGCUc-AGGGCGCc-GUCGCUGU- -5'
14473 5' -61 NC_003521.1 + 214815 0.66 0.809775
Target:  5'- gGGCGCCGGG---CGCGGCGaCGGCGg -3'
miRNA:   3'- gUCGUGGCUCaggGCGCCGUcGCUGU- -5'
14473 5' -61 NC_003521.1 + 128129 0.66 0.809775
Target:  5'- gGGguCCGAGggcggCCCGCGcuCGGCGAa- -3'
miRNA:   3'- gUCguGGCUCa----GGGCGCc-GUCGCUgu -5'
14473 5' -61 NC_003521.1 + 229497 0.66 0.809775
Target:  5'- gAGUaACCGAGUCuuGCGaCAGCuACGa -3'
miRNA:   3'- gUCG-UGGCUCAGggCGCcGUCGcUGU- -5'
14473 5' -61 NC_003521.1 + 123349 0.66 0.809775
Target:  5'- cCAGCGCCGcGg-CCGUGGCcucCGACAg -3'
miRNA:   3'- -GUCGUGGCuCagGGCGCCGuc-GCUGU- -5'
14473 5' -61 NC_003521.1 + 172559 0.66 0.809775
Target:  5'- -cGUGCCGcuGUCCCGgGGuCGGCGGu- -3'
miRNA:   3'- guCGUGGCu-CAGGGCgCC-GUCGCUgu -5'
14473 5' -61 NC_003521.1 + 43819 0.66 0.809775
Target:  5'- gCAGCAgCCGGGUCagccgCCGcCGGCcGCGGg- -3'
miRNA:   3'- -GUCGU-GGCUCAG-----GGC-GCCGuCGCUgu -5'
14473 5' -61 NC_003521.1 + 111370 0.66 0.809775
Target:  5'- cCGGCGCCGGGaCuaGCGGCgacggaGGgGACGc -3'
miRNA:   3'- -GUCGUGGCUCaGggCGCCG------UCgCUGU- -5'
14473 5' -61 NC_003521.1 + 197859 0.66 0.809775
Target:  5'- gGGCGCCGgcgGGUCgCGCucgcugGGCugcaGGCGGCAg -3'
miRNA:   3'- gUCGUGGC---UCAGgGCG------CCG----UCGCUGU- -5'
14473 5' -61 NC_003521.1 + 53870 0.66 0.809775
Target:  5'- cCGGCGuguaCGAGUgCCUGCuGGCAaCGACAg -3'
miRNA:   3'- -GUCGUg---GCUCA-GGGCG-CCGUcGCUGU- -5'
14473 5' -61 NC_003521.1 + 86427 0.66 0.809775
Target:  5'- -uGC-CCGccUCCUgauugGCGGCAGCGGCGa -3'
miRNA:   3'- guCGuGGCucAGGG-----CGCCGUCGCUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.