miRNA display CGI


Results 1 - 20 of 245 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14473 5' -61 NC_003521.1 + 229497 0.66 0.809775
Target:  5'- gAGUaACCGAGUCuuGCGaCAGCuACGa -3'
miRNA:   3'- gUCG-UGGCUCAGggCGCcGUCGcUGU- -5'
14473 5' -61 NC_003521.1 + 35724 0.66 0.77914
Target:  5'- aGGCGCUGaAGUCCUgcagaucagccacauGCGGUuGCGGCu -3'
miRNA:   3'- gUCGUGGC-UCAGGG---------------CGCCGuCGCUGu -5'
14473 5' -61 NC_003521.1 + 148197 0.66 0.792963
Target:  5'- -uGCACCGAGUCCagaaacaGCGuCGGCGuAUg -3'
miRNA:   3'- guCGUGGCUCAGGg------CGCcGUCGC-UGu -5'
14473 5' -61 NC_003521.1 + 123349 0.66 0.809775
Target:  5'- cCAGCGCCGcGg-CCGUGGCcucCGACAg -3'
miRNA:   3'- -GUCGUGGCuCagGGCGCCGuc-GCUGU- -5'
14473 5' -61 NC_003521.1 + 163185 0.66 0.817971
Target:  5'- gCGGCAgCGgacacgguGGUggCgGCGGCAGCGGCAg -3'
miRNA:   3'- -GUCGUgGC--------UCAg-GgCGCCGUCGCUGU- -5'
14473 5' -61 NC_003521.1 + 39454 0.66 0.817971
Target:  5'- cCGGCGCCGAGggCCGCGucgaaggauuGCGGauCGGCGc -3'
miRNA:   3'- -GUCGUGGCUCagGGCGC----------CGUC--GCUGU- -5'
14473 5' -61 NC_003521.1 + 104250 0.66 0.817971
Target:  5'- gAGCACCaGGUgCaGCGGCAGCuGCc -3'
miRNA:   3'- gUCGUGGcUCAgGgCGCCGUCGcUGu -5'
14473 5' -61 NC_003521.1 + 201338 0.66 0.817971
Target:  5'- uGGcCACCaucGUCCaCGaGGCGGCGACGg -3'
miRNA:   3'- gUC-GUGGcu-CAGG-GCgCCGUCGCUGU- -5'
14473 5' -61 NC_003521.1 + 30895 0.66 0.78436
Target:  5'- gAGgGCCGAGcugaaCUGCGGCAGgCGAgAg -3'
miRNA:   3'- gUCgUGGCUCag---GGCGCCGUC-GCUgU- -5'
14473 5' -61 NC_003521.1 + 111370 0.66 0.809775
Target:  5'- cCGGCGCCGGGaCuaGCGGCgacggaGGgGACGc -3'
miRNA:   3'- -GUCGUGGCUCaGggCGCCG------UCgCUGU- -5'
14473 5' -61 NC_003521.1 + 191041 0.66 0.817971
Target:  5'- gCAGCgucugcugGCCGAcgcucaguucuGuUCCCGCGGCgaccgugguGGCGGCGg -3'
miRNA:   3'- -GUCG--------UGGCU-----------C-AGGGCGCCG---------UCGCUGU- -5'
14473 5' -61 NC_003521.1 + 43819 0.66 0.809775
Target:  5'- gCAGCAgCCGGGUCagccgCCGcCGGCcGCGGg- -3'
miRNA:   3'- -GUCGU-GGCUCAG-----GGC-GCCGuCGCUgu -5'
14473 5' -61 NC_003521.1 + 128129 0.66 0.809775
Target:  5'- gGGguCCGAGggcggCCCGCGcuCGGCGAa- -3'
miRNA:   3'- gUCguGGCUCa----GGGCGCc-GUCGCUgu -5'
14473 5' -61 NC_003521.1 + 145031 0.66 0.792963
Target:  5'- -cGCGCUGGaUCgCGUGGCcgAGCGGCAc -3'
miRNA:   3'- guCGUGGCUcAGgGCGCCG--UCGCUGU- -5'
14473 5' -61 NC_003521.1 + 122092 0.66 0.78436
Target:  5'- gCAGCgACUuGGUCUCGUGcggcuGCAGCGGCGu -3'
miRNA:   3'- -GUCG-UGGcUCAGGGCGC-----CGUCGCUGU- -5'
14473 5' -61 NC_003521.1 + 222355 0.66 0.800595
Target:  5'- aGGCgacacucGCCGcgcAG-CCCGCGGUcgaAGCGGCAc -3'
miRNA:   3'- gUCG-------UGGC---UCaGGGCGCCG---UCGCUGU- -5'
14473 5' -61 NC_003521.1 + 202012 0.66 0.78436
Target:  5'- aCGGCGCCGcgaccaGGUCCgGgGGUccGGCGAa- -3'
miRNA:   3'- -GUCGUGGC------UCAGGgCgCCG--UCGCUgu -5'
14473 5' -61 NC_003521.1 + 70925 0.66 0.801437
Target:  5'- uCAGCGCCagcaGGGUCCacagcagcgaGCGG-AGCGGCu -3'
miRNA:   3'- -GUCGUGG----CUCAGGg---------CGCCgUCGCUGu -5'
14473 5' -61 NC_003521.1 + 73282 0.66 0.78436
Target:  5'- uCAGCAUCug--CCUGCGGCAG-GACGc -3'
miRNA:   3'- -GUCGUGGcucaGGGCGCCGUCgCUGU- -5'
14473 5' -61 NC_003521.1 + 214815 0.66 0.809775
Target:  5'- gGGCGCCGGG---CGCGGCGaCGGCGg -3'
miRNA:   3'- gUCGUGGCUCaggGCGCCGUcGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.