miRNA display CGI


Results 1 - 20 of 245 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14473 5' -61 NC_003521.1 + 122800 1.07 0.002197
Target:  5'- cCAGCACCGAGUCCCGCGGCAGCGACAc -3'
miRNA:   3'- -GUCGUGGCUCAGGGCGCCGUCGCUGU- -5'
14473 5' -61 NC_003521.1 + 6391 0.82 0.119649
Target:  5'- gGGCGCCGcAGcuaCCGCGGCGGCGACGg -3'
miRNA:   3'- gUCGUGGC-UCag-GGCGCCGUCGCUGU- -5'
14473 5' -61 NC_003521.1 + 201385 0.8 0.167963
Target:  5'- uCGGCGCCGGG-CUCGgcCGGCAGCGGCAu -3'
miRNA:   3'- -GUCGUGGCUCaGGGC--GCCGUCGCUGU- -5'
14473 5' -61 NC_003521.1 + 135224 0.79 0.189096
Target:  5'- gCAGCGCCuGAGcggcugcgCCgGCGGCGGCGACGa -3'
miRNA:   3'- -GUCGUGG-CUCa-------GGgCGCCGUCGCUGU- -5'
14473 5' -61 NC_003521.1 + 146529 0.79 0.193594
Target:  5'- gCGGCuccacCCGGGUCCCucCGGCGGCGGCAg -3'
miRNA:   3'- -GUCGu----GGCUCAGGGc-GCCGUCGCUGU- -5'
14473 5' -61 NC_003521.1 + 113868 0.78 0.198185
Target:  5'- aCGGCG-CGGGUUCCGCGGCggcacAGCGACAg -3'
miRNA:   3'- -GUCGUgGCUCAGGGCGCCG-----UCGCUGU- -5'
14473 5' -61 NC_003521.1 + 192300 0.77 0.227762
Target:  5'- uCGGCACCG---UCCGCGGUAGCGGCGu -3'
miRNA:   3'- -GUCGUGGCucaGGGCGCCGUCGCUGU- -5'
14473 5' -61 NC_003521.1 + 46025 0.76 0.272913
Target:  5'- gCAGCACCGuGaagggCCacaugGCGGCAGCGACGu -3'
miRNA:   3'- -GUCGUGGCuCa----GGg----CGCCGUCGCUGU- -5'
14473 5' -61 NC_003521.1 + 89613 0.76 0.285269
Target:  5'- aGGCGCCGcGGUCaCCGUGGUGGUGACc -3'
miRNA:   3'- gUCGUGGC-UCAG-GGCGCCGUCGCUGu -5'
14473 5' -61 NC_003521.1 + 74693 0.76 0.29161
Target:  5'- gCAGCAgCGAcGgcggCgCCGCGGCAGCGGCu -3'
miRNA:   3'- -GUCGUgGCU-Ca---G-GGCGCCGUCGCUGu -5'
14473 5' -61 NC_003521.1 + 17061 0.76 0.29161
Target:  5'- gCAGCGCCGAcgauaCCGCuGGCGGCGACc -3'
miRNA:   3'- -GUCGUGGCUcag--GGCG-CCGUCGCUGu -5'
14473 5' -61 NC_003521.1 + 55734 0.75 0.318078
Target:  5'- gCAGCGCC---UCCCagcgcgcggGCGGCAGCGACAg -3'
miRNA:   3'- -GUCGUGGcucAGGG---------CGCCGUCGCUGU- -5'
14473 5' -61 NC_003521.1 + 196981 0.75 0.331974
Target:  5'- gGGCGCCugugacGGG-CCCGCGGCcGGCGGCGg -3'
miRNA:   3'- gUCGUGG------CUCaGGGCGCCG-UCGCUGU- -5'
14473 5' -61 NC_003521.1 + 28255 0.74 0.346311
Target:  5'- aCGGCGCCGAGaggaacaGCGGCGGCGAUg -3'
miRNA:   3'- -GUCGUGGCUCaggg---CGCCGUCGCUGu -5'
14473 5' -61 NC_003521.1 + 16984 0.74 0.352168
Target:  5'- gCAGCAgCCGcAGggacagcaggcgCCCGCGGUGGCGGCGg -3'
miRNA:   3'- -GUCGU-GGC-UCa-----------GGGCGCCGUCGCUGU- -5'
14473 5' -61 NC_003521.1 + 31288 0.74 0.353644
Target:  5'- --cCGCCGGGcgcauaaCCGCGGCAGCGGCGa -3'
miRNA:   3'- gucGUGGCUCag-----GGCGCCGUCGCUGU- -5'
14473 5' -61 NC_003521.1 + 186641 0.74 0.353644
Target:  5'- gCGGCAagUCGAcGUCgCGCGGCGGUGGCGg -3'
miRNA:   3'- -GUCGU--GGCU-CAGgGCGCCGUCGCUGU- -5'
14473 5' -61 NC_003521.1 + 123589 0.74 0.360337
Target:  5'- gCGGCGCCGGGagCCgccgcggccgucaGCGGguGCGACAu -3'
miRNA:   3'- -GUCGUGGCUCagGG-------------CGCCguCGCUGU- -5'
14473 5' -61 NC_003521.1 + 74589 0.74 0.361086
Target:  5'- gCGGCGCgGcGUCCCGCGGcCGGCG-CGc -3'
miRNA:   3'- -GUCGUGgCuCAGGGCGCC-GUCGCuGU- -5'
14473 5' -61 NC_003521.1 + 68411 0.74 0.368636
Target:  5'- -cGCcUCGGGUCCCGCGGCGaCGGCu -3'
miRNA:   3'- guCGuGGCUCAGGGCGCCGUcGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.