miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1448 3' -54.4 NC_001335.1 + 2326 0.68 0.679825
Target:  5'- aGGAGU-GAGCUGG-GCCGGcUCaGGCCg -3'
miRNA:   3'- -CCUUAcCUUGGCCaCGGUCcAG-CUGG- -5'
1448 3' -54.4 NC_001335.1 + 3282 0.68 0.690668
Target:  5'- cGAGUGGGu----UGCCgAGGUCGGCCa -3'
miRNA:   3'- cCUUACCUuggccACGG-UCCAGCUGG- -5'
1448 3' -54.4 NC_001335.1 + 4459 0.66 0.793208
Target:  5'- aGGAGucgaaccUGGAACCGGcgGCUuuGGa-GACCg -3'
miRNA:   3'- -CCUU-------ACCUUGGCCa-CGGu-CCagCUGG- -5'
1448 3' -54.4 NC_001335.1 + 6213 0.77 0.214765
Target:  5'- ----aGGAACCGGUGCa--GUCGACCu -3'
miRNA:   3'- ccuuaCCUUGGCCACGgucCAGCUGG- -5'
1448 3' -54.4 NC_001335.1 + 7742 1.14 0.000605
Target:  5'- aGGAAUGGAACCGGUGCCAGGUCGACCu -3'
miRNA:   3'- -CCUUACCUUGGCCACGGUCCAGCUGG- -5'
1448 3' -54.4 NC_001335.1 + 7832 0.68 0.668936
Target:  5'- ----aGGuACUuG-GCCAGGUCGACCu -3'
miRNA:   3'- ccuuaCCuUGGcCaCGGUCCAGCUGG- -5'
1448 3' -54.4 NC_001335.1 + 9844 0.76 0.251073
Target:  5'- gGGAGccUGGGACCGucggGUCGGcGUCGACCa -3'
miRNA:   3'- -CCUU--ACCUUGGCca--CGGUC-CAGCUGG- -5'
1448 3' -54.4 NC_001335.1 + 10766 0.67 0.712177
Target:  5'- uGGAcAUGGugauuucGCCGcGUGCUAGG-CGGCg -3'
miRNA:   3'- -CCU-UACCu------UGGC-CACGGUCCaGCUGg -5'
1448 3' -54.4 NC_001335.1 + 11898 0.82 0.105415
Target:  5'- cGGcguUGGAGCCGGUGCCguccGGGUCcACCa -3'
miRNA:   3'- -CCuu-ACCUUGGCCACGG----UCCAGcUGG- -5'
1448 3' -54.4 NC_001335.1 + 14379 0.7 0.5384
Target:  5'- cGAGaccUGG-ACCGGUGCUaccgguuggacgAGcGUCGGCCa -3'
miRNA:   3'- cCUU---ACCuUGGCCACGG------------UC-CAGCUGG- -5'
1448 3' -54.4 NC_001335.1 + 16430 0.67 0.747975
Target:  5'- aGAacGUGGccUCGGgccucgugaacaugGCCGGGUCGAUCa -3'
miRNA:   3'- cCU--UACCuuGGCCa-------------CGGUCCAGCUGG- -5'
1448 3' -54.4 NC_001335.1 + 18194 0.68 0.656919
Target:  5'- cGAAaGGAACUGcuUGCCAGucgcuuucgcgaaGUCGACCg -3'
miRNA:   3'- cCUUaCCUUGGCc-ACGGUC-------------CAGCUGG- -5'
1448 3' -54.4 NC_001335.1 + 20240 0.78 0.192621
Target:  5'- aGGGAUGGuccaacuGGCCGGcgacgGCCAGGUCGAg- -3'
miRNA:   3'- -CCUUACC-------UUGGCCa----CGGUCCAGCUgg -5'
1448 3' -54.4 NC_001335.1 + 23159 0.72 0.421373
Target:  5'- ---cUGGGGCUGGgaagGCCAGGcucguaaccgcaaccUCGGCCa -3'
miRNA:   3'- ccuuACCUUGGCCa---CGGUCC---------------AGCUGG- -5'
1448 3' -54.4 NC_001335.1 + 24099 0.72 0.417609
Target:  5'- ----cGGGGCUGGUGcCCAGGUCu-CCg -3'
miRNA:   3'- ccuuaCCUUGGCCAC-GGUCCAGcuGG- -5'
1448 3' -54.4 NC_001335.1 + 25871 0.68 0.658013
Target:  5'- cGGggUGGcccaAGCagagauGGUGCCcuugguGGUCGACg -3'
miRNA:   3'- -CCuuACC----UUGg-----CCACGGu-----CCAGCUGg -5'
1448 3' -54.4 NC_001335.1 + 28791 0.71 0.486255
Target:  5'- -aGAUGGGuCCGGUGCU-GGUUGGCa -3'
miRNA:   3'- ccUUACCUuGGCCACGGuCCAGCUGg -5'
1448 3' -54.4 NC_001335.1 + 29890 0.7 0.527802
Target:  5'- cGggUGGAACaGGUcGau-GGUCGACCa -3'
miRNA:   3'- cCuuACCUUGgCCA-CgguCCAGCUGG- -5'
1448 3' -54.4 NC_001335.1 + 31902 0.72 0.43663
Target:  5'- cGGggUGGAgcuugaacagaGCCGGgggcagauggUGCCAaGGUCGGUCg -3'
miRNA:   3'- -CCuuACCU-----------UGGCC----------ACGGU-CCAGCUGG- -5'
1448 3' -54.4 NC_001335.1 + 32890 0.67 0.701456
Target:  5'- ----aGGAGCCGGgGCCGGcUCGGgCu -3'
miRNA:   3'- ccuuaCCUUGGCCaCGGUCcAGCUgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.