miRNA: 3'- aCCua-UUCGugCCGUCCCUcaaGCGA- -5'
miRNA: 3'- aCCUA--UUCG--------UGCCGUC-CCUCaa-----GCGA- -5'
miRNA: 3'- aCCUA------UUCGUGCCGUCCCUCaa----GCGa -5'
miRNA: 3'- -ACCUAUUCGUGCCGUCCCUCAAGCGA- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 1448 | 5' | -54.7 | NC_001335.1 | + | 32902 | 0.66 | 0.67627 |
|
Target: 5'- cGGcucGGGCugGGCAGGGGcggUGCUc -3' miRNA: 3'- aCCua-UUCGugCCGUCCCUcaaGCGA- -5' |
|||||||
| 1448 | 5' | -54.7 | NC_001335.1 | + | 42295 | 0.67 | 0.631541 |
|
Target: 5'- cGGAUucGAGCgugacgacGCGGCAGaGGAGcugcacgCGCUg -3' miRNA: 3'- aCCUA--UUCG--------UGCCGUC-CCUCaa-----GCGA- -5' |
|||||||
| 1448 | 5' | -54.7 | NC_001335.1 | + | 7922 | 0.76 | 0.20647 |
|
Target: 5'- gGGAUccccagAAGUACGGCGGGGAGguucccCGCg -3' miRNA: 3'- aCCUA------UUCGUGCCGUCCCUCaa----GCGa -5' |
|||||||
| 1448 | 5' | -54.7 | NC_001335.1 | + | 7780 | 1.07 | 0.001262 |
|
Target: 5'- cUGGAUAAGCACGGCAGGGAGUUCGCUc -3' miRNA: 3'- -ACCUAUUCGUGCCGUCCCUCAAGCGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home