miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14480 3' -57.6 NC_003521.1 + 86153 0.66 0.924959
Target:  5'- uAGCGC-UCCaGCGUCucgcugccggccucGGccaGCGGCACGu -3'
miRNA:   3'- -UCGCGaAGGaCGCAG--------------UC---UGCCGUGCc -5'
14480 3' -57.6 NC_003521.1 + 35213 0.66 0.921287
Target:  5'- gGGCGCgcgggucggaUCgaGCGUCcucggggcgcgAGACGGCACa- -3'
miRNA:   3'- -UCGCGa---------AGgaCGCAG-----------UCUGCCGUGcc -5'
14480 3' -57.6 NC_003521.1 + 38910 0.66 0.921287
Target:  5'- cGGCGUccccgcCCUGUGUCGuGGCGGCAg-- -3'
miRNA:   3'- -UCGCGaa----GGACGCAGU-CUGCCGUgcc -5'
14480 3' -57.6 NC_003521.1 + 115240 0.66 0.921287
Target:  5'- -aCGCaguacaUCUGCGUC-GAgGGCACGGa -3'
miRNA:   3'- ucGCGaa----GGACGCAGuCUgCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 153702 0.66 0.921287
Target:  5'- cGCGC-UCCUugggacgcGCGUCcaccaGCGGCACGa -3'
miRNA:   3'- uCGCGaAGGA--------CGCAGuc---UGCCGUGCc -5'
14480 3' -57.6 NC_003521.1 + 133593 0.66 0.915857
Target:  5'- cGCGCUcuucgagccUCCUGCuggagcacUguGugGGCAUGGc -3'
miRNA:   3'- uCGCGA---------AGGACGc-------AguCugCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 187701 0.67 0.910211
Target:  5'- cGCGCaggaccUUCUGCGUCGccaGCGGUACGu -3'
miRNA:   3'- uCGCGa-----AGGACGCAGUc--UGCCGUGCc -5'
14480 3' -57.6 NC_003521.1 + 210419 0.67 0.910211
Target:  5'- cAGCGUggUCgGCGU-GGGCGGCgACGGc -3'
miRNA:   3'- -UCGCGaaGGaCGCAgUCUGCCG-UGCC- -5'
14480 3' -57.6 NC_003521.1 + 232134 0.67 0.910211
Target:  5'- cGCGUUUcCCUGCGaauagcgaaUCGcGACGGCggAUGGa -3'
miRNA:   3'- uCGCGAA-GGACGC---------AGU-CUGCCG--UGCC- -5'
14480 3' -57.6 NC_003521.1 + 60683 0.67 0.910211
Target:  5'- cGUGCUgcggCCgcGCGggggacccggGGGCGGCGCGGg -3'
miRNA:   3'- uCGCGAa---GGa-CGCag--------UCUGCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 23629 0.67 0.910211
Target:  5'- cGcCGUggCCUGCcu-GGGCGGCAUGGa -3'
miRNA:   3'- uC-GCGaaGGACGcagUCUGCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 74351 0.67 0.910211
Target:  5'- uGGCGCUg-CUGCG-CGGcuACGGCcaguGCGGc -3'
miRNA:   3'- -UCGCGAagGACGCaGUC--UGCCG----UGCC- -5'
14480 3' -57.6 NC_003521.1 + 128210 0.67 0.910211
Target:  5'- gAGCGCgUCCacgaaGUCcaucuucuGGAUGGCGCGGu -3'
miRNA:   3'- -UCGCGaAGGacg--CAG--------UCUGCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 172327 0.67 0.908474
Target:  5'- uGGCGCaggccucggccgUCCUGUggcacacGUCGGGCGGguggguCACGGg -3'
miRNA:   3'- -UCGCGa-----------AGGACG-------CAGUCUGCC------GUGCC- -5'
14480 3' -57.6 NC_003521.1 + 213158 0.67 0.904348
Target:  5'- cGCGCUcgcUCgUGUGUCuGucccACGuGCGCGGg -3'
miRNA:   3'- uCGCGA---AGgACGCAGuC----UGC-CGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 117440 0.67 0.904348
Target:  5'- cGCGCggCCUGacuagccgccUGUCGGuGCGGCuguCGGa -3'
miRNA:   3'- uCGCGaaGGAC----------GCAGUC-UGCCGu--GCC- -5'
14480 3' -57.6 NC_003521.1 + 14107 0.67 0.90375
Target:  5'- gGGaCGCUgCCUGUGUCuggguccgccgaaGGGCuGGCACGu -3'
miRNA:   3'- -UC-GCGAaGGACGCAG-------------UCUG-CCGUGCc -5'
14480 3' -57.6 NC_003521.1 + 100338 0.67 0.90375
Target:  5'- gGGCGcCUUCCUcaaccGCGgcgaagccacgCggacgggugacggGGACGGCACGGa -3'
miRNA:   3'- -UCGC-GAAGGA-----CGCa----------G-------------UCUGCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 45267 0.67 0.90375
Target:  5'- aAGCGCUUCCUGgagaucaUGgacCGGGCGccGCugGGc -3'
miRNA:   3'- -UCGCGAAGGAC-------GCa--GUCUGC--CGugCC- -5'
14480 3' -57.6 NC_003521.1 + 19867 0.67 0.898271
Target:  5'- cAGCGCUcCCUGCu---GACGGCcgcguCGGc -3'
miRNA:   3'- -UCGCGAaGGACGcaguCUGCCGu----GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.