miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14480 5' -55.6 NC_003521.1 + 18317 0.66 0.958596
Target:  5'- cUUCGUGCCCagCGGCGUg---GUGCUg -3'
miRNA:   3'- aAGGCACGGGa-GCUGCGucuaCAUGA- -5'
14480 5' -55.6 NC_003521.1 + 84990 0.67 0.937792
Target:  5'- -aCCGUGCCCUgguaaccgaUGACGCAGGcccGCa -3'
miRNA:   3'- aaGGCACGGGA---------GCUGCGUCUacaUGa -5'
14480 5' -55.6 NC_003521.1 + 81632 0.67 0.932951
Target:  5'- -gUCGUgGgUCUCGGCGCGGAUgGUGCg -3'
miRNA:   3'- aaGGCA-CgGGAGCUGCGUCUA-CAUGa -5'
14480 5' -55.6 NC_003521.1 + 115284 0.67 0.927878
Target:  5'- -cCCGUGCCgUCuGACGCAGGaagcGCUg -3'
miRNA:   3'- aaGGCACGGgAG-CUGCGUCUaca-UGA- -5'
14480 5' -55.6 NC_003521.1 + 46592 0.67 0.927878
Target:  5'- cUUCuUGCCCaUGACGCAGGUGaACa -3'
miRNA:   3'- aAGGcACGGGaGCUGCGUCUACaUGa -5'
14480 5' -55.6 NC_003521.1 + 198077 0.67 0.927878
Target:  5'- uUUUCuUGCCCUCGGCGCGcacgGUGCc -3'
miRNA:   3'- -AAGGcACGGGAGCUGCGUcua-CAUGa -5'
14480 5' -55.6 NC_003521.1 + 12848 0.67 0.922575
Target:  5'- aUCaCGUGCgCgagcaGACGCAGcgGUACg -3'
miRNA:   3'- aAG-GCACGgGag---CUGCGUCuaCAUGa -5'
14480 5' -55.6 NC_003521.1 + 177764 0.67 0.91704
Target:  5'- --aCGcUGCCCgUGGCGCccaAGAUGUACUg -3'
miRNA:   3'- aagGC-ACGGGaGCUGCG---UCUACAUGA- -5'
14480 5' -55.6 NC_003521.1 + 149623 0.68 0.911275
Target:  5'- -aCUGUGCCCaCGACGCGcccGcgGUACc -3'
miRNA:   3'- aaGGCACGGGaGCUGCGU---CuaCAUGa -5'
14480 5' -55.6 NC_003521.1 + 83228 0.68 0.899062
Target:  5'- -aCgGUGCCCUCGGCGCAcuUG-ACc -3'
miRNA:   3'- aaGgCACGGGAGCUGCGUcuACaUGa -5'
14480 5' -55.6 NC_003521.1 + 46257 0.68 0.892617
Target:  5'- --aCGUcGCCCUCGguggcgguaGCGCAGAgGUGCa -3'
miRNA:   3'- aagGCA-CGGGAGC---------UGCGUCUaCAUGa -5'
14480 5' -55.6 NC_003521.1 + 127132 0.68 0.885953
Target:  5'- -gUCGUGCaCCUccaggCGGCGCAGAUcgccGUACUg -3'
miRNA:   3'- aaGGCACG-GGA-----GCUGCGUCUA----CAUGA- -5'
14480 5' -55.6 NC_003521.1 + 159117 0.69 0.871976
Target:  5'- cUCCGUGCUCUCcuggGACGUggaAGAUGaGCa -3'
miRNA:   3'- aAGGCACGGGAG----CUGCG---UCUACaUGa -5'
14480 5' -55.6 NC_003521.1 + 80389 0.69 0.871976
Target:  5'- -gCCGUcgcGCCUUCGGCGUucugcGGUGUGCg -3'
miRNA:   3'- aaGGCA---CGGGAGCUGCGu----CUACAUGa -5'
14480 5' -55.6 NC_003521.1 + 149051 0.69 0.857169
Target:  5'- -gCCGUGCCCgcgcugggcuUCGACGCGGccGcGCUc -3'
miRNA:   3'- aaGGCACGGG----------AGCUGCGUCuaCaUGA- -5'
14480 5' -55.6 NC_003521.1 + 32905 0.7 0.799497
Target:  5'- -gCCGUGCCCgccgccccCGGCGUAGGUG-GCg -3'
miRNA:   3'- aaGGCACGGGa-------GCUGCGUCUACaUGa -5'
14480 5' -55.6 NC_003521.1 + 93863 0.7 0.799497
Target:  5'- cUCCc-GCCCUCuGACGCGGAUG-GCUu -3'
miRNA:   3'- aAGGcaCGGGAG-CUGCGUCUACaUGA- -5'
14480 5' -55.6 NC_003521.1 + 237384 0.71 0.79061
Target:  5'- -cCUGUGCCCUCGGCGuCGGcAUG-GCg -3'
miRNA:   3'- aaGGCACGGGAGCUGC-GUC-UACaUGa -5'
14480 5' -55.6 NC_003521.1 + 195156 0.71 0.763157
Target:  5'- gUCCG-GCCCcUGAUaGCGGGUGUGCg -3'
miRNA:   3'- aAGGCaCGGGaGCUG-CGUCUACAUGa -5'
14480 5' -55.6 NC_003521.1 + 203826 0.71 0.75377
Target:  5'- cUCCGccgcgacGCCCUCGuCGCGGAUGUcGCc -3'
miRNA:   3'- aAGGCa------CGGGAGCuGCGUCUACA-UGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.