miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14485 3' -51.7 NC_003521.1 + 130495 0.67 0.993598
Target:  5'- gCGAGcgcGGCcGCGuCAUGAUGGccCUGCGg -3'
miRNA:   3'- -GCUC---UCGuCGCuGUACUACUa-GACGU- -5'
14485 3' -51.7 NC_003521.1 + 171669 0.67 0.992638
Target:  5'- uCGGGAGCgucGGCGGCAUGAcGA---GCAa -3'
miRNA:   3'- -GCUCUCG---UCGCUGUACUaCUagaCGU- -5'
14485 3' -51.7 NC_003521.1 + 126754 0.67 0.991223
Target:  5'- aCGAacuGCAGCGACGUGAaguccggcaggcccUGGcgCUGCGc -3'
miRNA:   3'- -GCUcu-CGUCGCUGUACU--------------ACUa-GACGU- -5'
14485 3' -51.7 NC_003521.1 + 69070 0.67 0.990868
Target:  5'- cCGAGAGUgacccgugucaugauGGUGGCGUGGUGGUacuuggugUGCAc -3'
miRNA:   3'- -GCUCUCG---------------UCGCUGUACUACUAg-------ACGU- -5'
14485 3' -51.7 NC_003521.1 + 7433 0.67 0.990377
Target:  5'- cCGAGAcgGCAGCGGCAgcuccgGAUCccgGCGa -3'
miRNA:   3'- -GCUCU--CGUCGCUGUacua--CUAGa--CGU- -5'
14485 3' -51.7 NC_003521.1 + 165135 0.67 0.989865
Target:  5'- aCGGGGGCuggaccgcggugccGGCGugAUGGUGGUgaugauggugggaCUGCGc -3'
miRNA:   3'- -GCUCUCG--------------UCGCugUACUACUA-------------GACGU- -5'
14485 3' -51.7 NC_003521.1 + 229493 0.67 0.989058
Target:  5'- aCGAGAGUAaccgagucuuGCGACAgcuacGAUGGUCacaGCAg -3'
miRNA:   3'- -GCUCUCGU----------CGCUGUa----CUACUAGa--CGU- -5'
14485 3' -51.7 NC_003521.1 + 116086 0.67 0.989058
Target:  5'- gCGAGuGCAGCGGCuguccgcgcGAcaucuuuucgcUGAUCUGUAa -3'
miRNA:   3'- -GCUCuCGUCGCUGua-------CU-----------ACUAGACGU- -5'
14485 3' -51.7 NC_003521.1 + 98630 0.67 0.989058
Target:  5'- gCGAGAGCGGCGGCG-GcgGuagCgGCGu -3'
miRNA:   3'- -GCUCUCGUCGCUGUaCuaCua-GaCGU- -5'
14485 3' -51.7 NC_003521.1 + 23274 0.68 0.987603
Target:  5'- uGAcGGCgAGCGACGUGcaccgcuuccUGGUCUGCAc -3'
miRNA:   3'- gCUcUCG-UCGCUGUACu---------ACUAGACGU- -5'
14485 3' -51.7 NC_003521.1 + 98216 0.68 0.987603
Target:  5'- uCGGcGGGCAGCGGCGUGG-GAg--GCGg -3'
miRNA:   3'- -GCU-CUCGUCGCUGUACUaCUagaCGU- -5'
14485 3' -51.7 NC_003521.1 + 66117 0.68 0.987603
Target:  5'- gGAGAGUAGgGACcUG-UGG-CUGCAg -3'
miRNA:   3'- gCUCUCGUCgCUGuACuACUaGACGU- -5'
14485 3' -51.7 NC_003521.1 + 38241 0.68 0.987603
Target:  5'- gGAGAGCAuUGACGccGGUGAUCUcaGCGg -3'
miRNA:   3'- gCUCUCGUcGCUGUa-CUACUAGA--CGU- -5'
14485 3' -51.7 NC_003521.1 + 168587 0.68 0.986003
Target:  5'- uGAcccAGCGGCGGCAUGGacaUGggCUGCu -3'
miRNA:   3'- gCUc--UCGUCGCUGUACU---ACuaGACGu -5'
14485 3' -51.7 NC_003521.1 + 24243 0.68 0.985835
Target:  5'- gCGAGAGCgacgaggaacaggAGCGAUAUGAagcgucccUGGccgCUGCAc -3'
miRNA:   3'- -GCUCUCG-------------UCGCUGUACU--------ACUa--GACGU- -5'
14485 3' -51.7 NC_003521.1 + 223085 0.68 0.984249
Target:  5'- gGAGGcCAGCGaACGUGcguaGAUCUGCGg -3'
miRNA:   3'- gCUCUcGUCGC-UGUACua--CUAGACGU- -5'
14485 3' -51.7 NC_003521.1 + 190534 0.68 0.982333
Target:  5'- gCGAGGuGCGGCGGCAgcagcgGcgGAcccggCUGCAg -3'
miRNA:   3'- -GCUCU-CGUCGCUGUa-----CuaCUa----GACGU- -5'
14485 3' -51.7 NC_003521.1 + 212578 0.68 0.982333
Target:  5'- uGAGAGCGGUGuaaacCAUGAUcAUCaGCAg -3'
miRNA:   3'- gCUCUCGUCGCu----GUACUAcUAGaCGU- -5'
14485 3' -51.7 NC_003521.1 + 204699 0.68 0.979364
Target:  5'- aCGAGGGCAGCGAgGUGAccaccacgGCGg -3'
miRNA:   3'- -GCUCUCGUCGCUgUACUacuaga--CGU- -5'
14485 3' -51.7 NC_003521.1 + 96548 0.69 0.978911
Target:  5'- gCGAGucgccgugcucgcccAGCAGacaGGCGUGGuagcUGAUCUGCGc -3'
miRNA:   3'- -GCUC---------------UCGUCg--CUGUACU----ACUAGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.