miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14485 5' -55.2 NC_003521.1 + 24640 0.67 0.951556
Target:  5'- gGUGCUCAgcgccuUCGUCcugGCGCUGgUGGUCa -3'
miRNA:   3'- gCACGAGU------GGUAG---UGCGGCgACUAGa -5'
14485 5' -55.2 NC_003521.1 + 88751 0.67 0.951556
Target:  5'- --aGgaCGCCAUCACGCaGCUGAa-- -3'
miRNA:   3'- gcaCgaGUGGUAGUGCGgCGACUaga -5'
14485 5' -55.2 NC_003521.1 + 200655 0.67 0.947453
Target:  5'- cCG-GCaCGCCAaCGCGCCGCUaAUCa -3'
miRNA:   3'- -GCaCGaGUGGUaGUGCGGCGAcUAGa -5'
14485 5' -55.2 NC_003521.1 + 203305 0.67 0.947453
Target:  5'- --aGgUUGCCGUUGCuGUCGCUGAUCUg -3'
miRNA:   3'- gcaCgAGUGGUAGUG-CGGCGACUAGA- -5'
14485 5' -55.2 NC_003521.1 + 195606 0.67 0.947453
Target:  5'- gGUGCgcaGCCggCcCGCCaGCUGGUCg -3'
miRNA:   3'- gCACGag-UGGuaGuGCGG-CGACUAGa -5'
14485 5' -55.2 NC_003521.1 + 152263 0.67 0.947031
Target:  5'- uGUGCUUAgugaaguCCGUacggaccuccagCACGCCGCgGAUCa -3'
miRNA:   3'- gCACGAGU-------GGUA------------GUGCGGCGaCUAGa -5'
14485 5' -55.2 NC_003521.1 + 112138 0.67 0.943127
Target:  5'- -aUGCagAUCAUCAUGUCGCUGcUCUc -3'
miRNA:   3'- gcACGagUGGUAGUGCGGCGACuAGA- -5'
14485 5' -55.2 NC_003521.1 + 160776 0.67 0.938576
Target:  5'- gCGUGC-CGCCGgcggCACGCgggCGCgGGUCUu -3'
miRNA:   3'- -GCACGaGUGGUa---GUGCG---GCGaCUAGA- -5'
14485 5' -55.2 NC_003521.1 + 4987 0.67 0.938576
Target:  5'- gGUGcCUCACCAUCcCGCgucagaCGCUGAc-- -3'
miRNA:   3'- gCAC-GAGUGGUAGuGCG------GCGACUaga -5'
14485 5' -55.2 NC_003521.1 + 128289 0.67 0.938576
Target:  5'- gGUGCUgACCAgcuCGCCGCgGAaaUCg -3'
miRNA:   3'- gCACGAgUGGUaguGCGGCGaCU--AGa -5'
14485 5' -55.2 NC_003521.1 + 197856 0.67 0.938576
Target:  5'- gGUGggCGCCggcggGUCGCGCuCGCUGggCUg -3'
miRNA:   3'- gCACgaGUGG-----UAGUGCG-GCGACuaGA- -5'
14485 5' -55.2 NC_003521.1 + 48019 0.68 0.933797
Target:  5'- --cGUUCACCGUCACGUugguuaUGCUGAcguUCa -3'
miRNA:   3'- gcaCGAGUGGUAGUGCG------GCGACU---AGa -5'
14485 5' -55.2 NC_003521.1 + 102476 0.68 0.930821
Target:  5'- uGUGCUuagagaggcccgagaCGCCGUCGCgcaGCCGCaGGUCc -3'
miRNA:   3'- gCACGA---------------GUGGUAGUG---CGGCGaCUAGa -5'
14485 5' -55.2 NC_003521.1 + 137771 0.68 0.928791
Target:  5'- --aGCUCuuCCGUCACGCC-CUGGaacUCUg -3'
miRNA:   3'- gcaCGAGu-GGUAGUGCGGcGACU---AGA- -5'
14485 5' -55.2 NC_003521.1 + 198204 0.68 0.928791
Target:  5'- aCGUGUUCccagcggcccguACCGUCACGCUGUcGcgCUa -3'
miRNA:   3'- -GCACGAG------------UGGUAGUGCGGCGaCuaGA- -5'
14485 5' -55.2 NC_003521.1 + 121981 0.68 0.923555
Target:  5'- uGUGCUgCACCAUCAgGUgGUUG-UCg -3'
miRNA:   3'- gCACGA-GUGGUAGUgCGgCGACuAGa -5'
14485 5' -55.2 NC_003521.1 + 129317 0.68 0.91809
Target:  5'- gCGUGCgcCGCCGcCGCcagcCCGCUGGUCa -3'
miRNA:   3'- -GCACGa-GUGGUaGUGc---GGCGACUAGa -5'
14485 5' -55.2 NC_003521.1 + 207789 0.68 0.91809
Target:  5'- aCGUGCUgCuCUAUggCACGgCGCUGGUCa -3'
miRNA:   3'- -GCACGA-GuGGUA--GUGCgGCGACUAGa -5'
14485 5' -55.2 NC_003521.1 + 238837 0.68 0.914702
Target:  5'- gGUGUUCGCCGUaugcguuauuagaggCGCGCCgGCUGGg-- -3'
miRNA:   3'- gCACGAGUGGUA---------------GUGCGG-CGACUaga -5'
14485 5' -55.2 NC_003521.1 + 38610 0.68 0.914702
Target:  5'- gGUGUUCGCCGUaugcguuauuagaggCGCGCCgGCUGGg-- -3'
miRNA:   3'- gCACGAGUGGUA---------------GUGCGG-CGACUaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.