miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14486 3' -53.7 NC_003521.1 + 111754 0.66 0.990259
Target:  5'- aCGCCgAGgGUCUGCGCCAgCucAGgGCGc -3'
miRNA:   3'- -GUGG-UCgCAGACGUGGU-GcuUCaUGC- -5'
14486 3' -53.7 NC_003521.1 + 105354 0.66 0.990259
Target:  5'- gCGCCAcuGCGUCcGCGuCgACGggGgGCGg -3'
miRNA:   3'- -GUGGU--CGCAGaCGU-GgUGCuuCaUGC- -5'
14486 3' -53.7 NC_003521.1 + 124746 0.66 0.990259
Target:  5'- --aCAGCGcugcacucgCUGCGCCugGAAGaGCu -3'
miRNA:   3'- gugGUCGCa--------GACGUGGugCUUCaUGc -5'
14486 3' -53.7 NC_003521.1 + 133380 0.66 0.990259
Target:  5'- uGCCAGCGUCacGCuacCCACcAAGUcuuGCGa -3'
miRNA:   3'- gUGGUCGCAGa-CGu--GGUGcUUCA---UGC- -5'
14486 3' -53.7 NC_003521.1 + 228281 0.66 0.990259
Target:  5'- aCGCuCGGCGUCcucCACgGCGAAGUGg- -3'
miRNA:   3'- -GUG-GUCGCAGac-GUGgUGCUUCAUgc -5'
14486 3' -53.7 NC_003521.1 + 2081 0.66 0.990259
Target:  5'- cCGCCGGCccgacuUCUGCugCugGAacugcugccGGUGCu -3'
miRNA:   3'- -GUGGUCGc-----AGACGugGugCU---------UCAUGc -5'
14486 3' -53.7 NC_003521.1 + 111182 0.66 0.990259
Target:  5'- -cCCGGCGaCgGCGCCGCGGacGGUGgGc -3'
miRNA:   3'- guGGUCGCaGaCGUGGUGCU--UCAUgC- -5'
14486 3' -53.7 NC_003521.1 + 202309 0.66 0.990259
Target:  5'- cCGCCGGCccgacuUCUGCugCugGAacugcugccGGUGCu -3'
miRNA:   3'- -GUGGUCGc-----AGACGugGugCU---------UCAUGc -5'
14486 3' -53.7 NC_003521.1 + 232352 0.66 0.990259
Target:  5'- gUAgCAGCaGUCgcggcgGCACCGCGAA--GCGg -3'
miRNA:   3'- -GUgGUCG-CAGa-----CGUGGUGCUUcaUGC- -5'
14486 3' -53.7 NC_003521.1 + 147792 0.66 0.990259
Target:  5'- -cCCAGCGccacCUGCACCagguugACGAucaucGUGCGg -3'
miRNA:   3'- guGGUCGCa---GACGUGG------UGCUu----CAUGC- -5'
14486 3' -53.7 NC_003521.1 + 220091 0.66 0.990259
Target:  5'- aCACgCAGCugaUGCACCGCcagcGGUACGg -3'
miRNA:   3'- -GUG-GUCGcagACGUGGUGcu--UCAUGC- -5'
14486 3' -53.7 NC_003521.1 + 113161 0.66 0.990259
Target:  5'- cCGCCugcucGCGgccaagaUGgGCCGCGAGGUGCc -3'
miRNA:   3'- -GUGGu----CGCag-----ACgUGGUGCUUCAUGc -5'
14486 3' -53.7 NC_003521.1 + 68948 0.66 0.990259
Target:  5'- -cCUAGCGUCUGguCCG-GGAG-ACGg -3'
miRNA:   3'- guGGUCGCAGACguGGUgCUUCaUGC- -5'
14486 3' -53.7 NC_003521.1 + 28835 0.66 0.990259
Target:  5'- uCugCGGCGcCUGgACgACGAGcUGCGg -3'
miRNA:   3'- -GugGUCGCaGACgUGgUGCUUcAUGC- -5'
14486 3' -53.7 NC_003521.1 + 64972 0.66 0.990259
Target:  5'- uGCCGGUGacCUcGCACgACGAcGUGCGc -3'
miRNA:   3'- gUGGUCGCa-GA-CGUGgUGCUuCAUGC- -5'
14486 3' -53.7 NC_003521.1 + 78739 0.66 0.990135
Target:  5'- gGCCAGgaguuguCGUCggGCacgGCCACGAGGUcCGa -3'
miRNA:   3'- gUGGUC-------GCAGa-CG---UGGUGCUUCAuGC- -5'
14486 3' -53.7 NC_003521.1 + 159806 0.66 0.988961
Target:  5'- gACCAGCGUCaaggUGCugCGgGAcaUGCa -3'
miRNA:   3'- gUGGUCGCAG----ACGugGUgCUucAUGc -5'
14486 3' -53.7 NC_003521.1 + 200103 0.66 0.988961
Target:  5'- uUAUCGGUcUCgaGCGCCGCGAuguGGUGCa -3'
miRNA:   3'- -GUGGUCGcAGa-CGUGGUGCU---UCAUGc -5'
14486 3' -53.7 NC_003521.1 + 46525 0.66 0.988961
Target:  5'- aCACgGGCGUCUucuccaggcGCACCAgGGccucgcgccgGGUGCu -3'
miRNA:   3'- -GUGgUCGCAGA---------CGUGGUgCU----------UCAUGc -5'
14486 3' -53.7 NC_003521.1 + 100495 0.66 0.988961
Target:  5'- cCGCCAG-GUg-GCACCGCGGgcgucggacGGUGCa -3'
miRNA:   3'- -GUGGUCgCAgaCGUGGUGCU---------UCAUGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.