Results 1 - 20 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14486 | 3' | -53.7 | NC_003521.1 | + | 111754 | 0.66 | 0.990259 |
Target: 5'- aCGCCgAGgGUCUGCGCCAgCucAGgGCGc -3' miRNA: 3'- -GUGG-UCgCAGACGUGGU-GcuUCaUGC- -5' |
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14486 | 3' | -53.7 | NC_003521.1 | + | 105354 | 0.66 | 0.990259 |
Target: 5'- gCGCCAcuGCGUCcGCGuCgACGggGgGCGg -3' miRNA: 3'- -GUGGU--CGCAGaCGU-GgUGCuuCaUGC- -5' |
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14486 | 3' | -53.7 | NC_003521.1 | + | 124746 | 0.66 | 0.990259 |
Target: 5'- --aCAGCGcugcacucgCUGCGCCugGAAGaGCu -3' miRNA: 3'- gugGUCGCa--------GACGUGGugCUUCaUGc -5' |
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14486 | 3' | -53.7 | NC_003521.1 | + | 133380 | 0.66 | 0.990259 |
Target: 5'- uGCCAGCGUCacGCuacCCACcAAGUcuuGCGa -3' miRNA: 3'- gUGGUCGCAGa-CGu--GGUGcUUCA---UGC- -5' |
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14486 | 3' | -53.7 | NC_003521.1 | + | 228281 | 0.66 | 0.990259 |
Target: 5'- aCGCuCGGCGUCcucCACgGCGAAGUGg- -3' miRNA: 3'- -GUG-GUCGCAGac-GUGgUGCUUCAUgc -5' |
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14486 | 3' | -53.7 | NC_003521.1 | + | 2081 | 0.66 | 0.990259 |
Target: 5'- cCGCCGGCccgacuUCUGCugCugGAacugcugccGGUGCu -3' miRNA: 3'- -GUGGUCGc-----AGACGugGugCU---------UCAUGc -5' |
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14486 | 3' | -53.7 | NC_003521.1 | + | 111182 | 0.66 | 0.990259 |
Target: 5'- -cCCGGCGaCgGCGCCGCGGacGGUGgGc -3' miRNA: 3'- guGGUCGCaGaCGUGGUGCU--UCAUgC- -5' |
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14486 | 3' | -53.7 | NC_003521.1 | + | 202309 | 0.66 | 0.990259 |
Target: 5'- cCGCCGGCccgacuUCUGCugCugGAacugcugccGGUGCu -3' miRNA: 3'- -GUGGUCGc-----AGACGugGugCU---------UCAUGc -5' |
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14486 | 3' | -53.7 | NC_003521.1 | + | 232352 | 0.66 | 0.990259 |
Target: 5'- gUAgCAGCaGUCgcggcgGCACCGCGAA--GCGg -3' miRNA: 3'- -GUgGUCG-CAGa-----CGUGGUGCUUcaUGC- -5' |
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14486 | 3' | -53.7 | NC_003521.1 | + | 147792 | 0.66 | 0.990259 |
Target: 5'- -cCCAGCGccacCUGCACCagguugACGAucaucGUGCGg -3' miRNA: 3'- guGGUCGCa---GACGUGG------UGCUu----CAUGC- -5' |
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14486 | 3' | -53.7 | NC_003521.1 | + | 220091 | 0.66 | 0.990259 |
Target: 5'- aCACgCAGCugaUGCACCGCcagcGGUACGg -3' miRNA: 3'- -GUG-GUCGcagACGUGGUGcu--UCAUGC- -5' |
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14486 | 3' | -53.7 | NC_003521.1 | + | 113161 | 0.66 | 0.990259 |
Target: 5'- cCGCCugcucGCGgccaagaUGgGCCGCGAGGUGCc -3' miRNA: 3'- -GUGGu----CGCag-----ACgUGGUGCUUCAUGc -5' |
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14486 | 3' | -53.7 | NC_003521.1 | + | 68948 | 0.66 | 0.990259 |
Target: 5'- -cCUAGCGUCUGguCCG-GGAG-ACGg -3' miRNA: 3'- guGGUCGCAGACguGGUgCUUCaUGC- -5' |
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14486 | 3' | -53.7 | NC_003521.1 | + | 28835 | 0.66 | 0.990259 |
Target: 5'- uCugCGGCGcCUGgACgACGAGcUGCGg -3' miRNA: 3'- -GugGUCGCaGACgUGgUGCUUcAUGC- -5' |
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14486 | 3' | -53.7 | NC_003521.1 | + | 64972 | 0.66 | 0.990259 |
Target: 5'- uGCCGGUGacCUcGCACgACGAcGUGCGc -3' miRNA: 3'- gUGGUCGCa-GA-CGUGgUGCUuCAUGC- -5' |
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14486 | 3' | -53.7 | NC_003521.1 | + | 78739 | 0.66 | 0.990135 |
Target: 5'- gGCCAGgaguuguCGUCggGCacgGCCACGAGGUcCGa -3' miRNA: 3'- gUGGUC-------GCAGa-CG---UGGUGCUUCAuGC- -5' |
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14486 | 3' | -53.7 | NC_003521.1 | + | 159806 | 0.66 | 0.988961 |
Target: 5'- gACCAGCGUCaaggUGCugCGgGAcaUGCa -3' miRNA: 3'- gUGGUCGCAG----ACGugGUgCUucAUGc -5' |
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14486 | 3' | -53.7 | NC_003521.1 | + | 200103 | 0.66 | 0.988961 |
Target: 5'- uUAUCGGUcUCgaGCGCCGCGAuguGGUGCa -3' miRNA: 3'- -GUGGUCGcAGa-CGUGGUGCU---UCAUGc -5' |
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14486 | 3' | -53.7 | NC_003521.1 | + | 46525 | 0.66 | 0.988961 |
Target: 5'- aCACgGGCGUCUucuccaggcGCACCAgGGccucgcgccgGGUGCu -3' miRNA: 3'- -GUGgUCGCAGA---------CGUGGUgCU----------UCAUGc -5' |
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14486 | 3' | -53.7 | NC_003521.1 | + | 100495 | 0.66 | 0.988961 |
Target: 5'- cCGCCAG-GUg-GCACCGCGGgcgucggacGGUGCa -3' miRNA: 3'- -GUGGUCgCAgaCGUGGUGCU---------UCAUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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