miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14486 5' -55.3 NC_003521.1 + 36371 0.66 0.961797
Target:  5'- gGCGCGGCuucGCGUgCUGCuuuccguGCUGc -3'
miRNA:   3'- aCGCGUCGu--CGCA-GACGuucuu--CGAC- -5'
14486 5' -55.3 NC_003521.1 + 228122 0.66 0.961797
Target:  5'- cGCGUAGCAGCcGUCgGUccuGGAGUa- -3'
miRNA:   3'- aCGCGUCGUCG-CAGaCGuu-CUUCGac -5'
14486 5' -55.3 NC_003521.1 + 59428 0.66 0.961797
Target:  5'- cGCGaCAGCGGCGcCgccgccgGCAGcGAGCUc -3'
miRNA:   3'- aCGC-GUCGUCGCaGa------CGUUcUUCGAc -5'
14486 5' -55.3 NC_003521.1 + 203554 0.66 0.961797
Target:  5'- gGCGCGuGCAcCGUCaGCGAGAAGa-- -3'
miRNA:   3'- aCGCGU-CGUcGCAGaCGUUCUUCgac -5'
14486 5' -55.3 NC_003521.1 + 230130 0.66 0.961797
Target:  5'- cGUGCcgguGGCGuuGCGUUUGUAccAGAAGUUGg -3'
miRNA:   3'- aCGCG----UCGU--CGCAGACGU--UCUUCGAC- -5'
14486 5' -55.3 NC_003521.1 + 212239 0.66 0.961797
Target:  5'- gUGCGCAGCAGCccgccGUCcGCGuAGucGgUGg -3'
miRNA:   3'- -ACGCGUCGUCG-----CAGaCGU-UCuuCgAC- -5'
14486 5' -55.3 NC_003521.1 + 117813 0.66 0.961797
Target:  5'- aGCGUAGCGGUaaacGUC-GCaAAGAGGCc- -3'
miRNA:   3'- aCGCGUCGUCG----CAGaCG-UUCUUCGac -5'
14486 5' -55.3 NC_003521.1 + 99689 0.66 0.96145
Target:  5'- -uCGCGGCcgaaacaGGUGUCgcggGCGcAGAAGCUGc -3'
miRNA:   3'- acGCGUCG-------UCGCAGa---CGU-UCUUCGAC- -5'
14486 5' -55.3 NC_003521.1 + 10022 0.66 0.958228
Target:  5'- aGcCGCAGCAGCGUgaccaUUGuCAAGGgcGGCa- -3'
miRNA:   3'- aC-GCGUCGUCGCA-----GAC-GUUCU--UCGac -5'
14486 5' -55.3 NC_003521.1 + 155387 0.66 0.958228
Target:  5'- gGCGCGGacgacgaGGCcg--GCGGGggGCUGg -3'
miRNA:   3'- aCGCGUCg------UCGcagaCGUUCuuCGAC- -5'
14486 5' -55.3 NC_003521.1 + 103975 0.66 0.958228
Target:  5'- cGUGCAuuuCuGCGUCUGCAggcAGAAGUa- -3'
miRNA:   3'- aCGCGUc--GuCGCAGACGU---UCUUCGac -5'
14486 5' -55.3 NC_003521.1 + 129060 0.66 0.958228
Target:  5'- cGCGCAGCAcCGUgUGCAu--GGCc- -3'
miRNA:   3'- aCGCGUCGUcGCAgACGUucuUCGac -5'
14486 5' -55.3 NC_003521.1 + 110298 0.66 0.958228
Target:  5'- gGCGCAGCAcgaaguugucGCG-CUGgUAGGggGCc- -3'
miRNA:   3'- aCGCGUCGU----------CGCaGAC-GUUCuuCGac -5'
14486 5' -55.3 NC_003521.1 + 153370 0.66 0.958228
Target:  5'- aGCGCugAGUccaaGGaCGUCgGUggGggGCUGg -3'
miRNA:   3'- aCGCG--UCG----UC-GCAGaCGuuCuuCGAC- -5'
14486 5' -55.3 NC_003521.1 + 166736 0.66 0.958228
Target:  5'- cGCGCAGCA-UGUCgGCcAGcaccAGCUGg -3'
miRNA:   3'- aCGCGUCGUcGCAGaCGuUCu---UCGAC- -5'
14486 5' -55.3 NC_003521.1 + 208824 0.66 0.958228
Target:  5'- -cUGCGGCAGC-UgUGCAcguugaccgAGGAGCUGu -3'
miRNA:   3'- acGCGUCGUCGcAgACGU---------UCUUCGAC- -5'
14486 5' -55.3 NC_003521.1 + 136181 0.66 0.958228
Target:  5'- --gGCGGCGGCGUCgaGCAugaAGgcGCUc -3'
miRNA:   3'- acgCGUCGUCGCAGa-CGU---UCuuCGAc -5'
14486 5' -55.3 NC_003521.1 + 135620 0.66 0.957115
Target:  5'- cGCGCAGCucGCGggcggaucccacgaUCgGCGGGggGCc- -3'
miRNA:   3'- aCGCGUCGu-CGC--------------AGaCGUUCuuCGac -5'
14486 5' -55.3 NC_003521.1 + 141954 0.66 0.954437
Target:  5'- gGCGCccaccugcugGGCgacgAGCGUCaggagcUGCAgcGGGAGCUGg -3'
miRNA:   3'- aCGCG----------UCG----UCGCAG------ACGU--UCUUCGAC- -5'
14486 5' -55.3 NC_003521.1 + 55019 0.66 0.954437
Target:  5'- gGCGCAGCgccAGCGUCggcgGCuccgaGAGAcGCg- -3'
miRNA:   3'- aCGCGUCG---UCGCAGa---CG-----UUCUuCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.