miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14489 3' -54.9 NC_003521.1 + 155385 0.66 0.983517
Target:  5'- -cCGGCGcGGACGAcgaggccGGCGGGGGgcUGGg -3'
miRNA:   3'- guGCCGCuCCUGCUa------CUGCUCCU--ACU- -5'
14489 3' -54.9 NC_003521.1 + 98650 0.66 0.983517
Target:  5'- aGCGGCGucGACGAcGGCGAGcuugcGcgGAg -3'
miRNA:   3'- gUGCCGCucCUGCUaCUGCUC-----CuaCU- -5'
14489 3' -54.9 NC_003521.1 + 100575 0.66 0.983517
Target:  5'- gCACGaG-GAGGACGAcGACGcGGAggGAg -3'
miRNA:   3'- -GUGC-CgCUCCUGCUaCUGCuCCUa-CU- -5'
14489 3' -54.9 NC_003521.1 + 86969 0.66 0.983517
Target:  5'- gGCGGUGAGGggguugucuACGAUGuAgGAGGcggcgGUGAu -3'
miRNA:   3'- gUGCCGCUCC---------UGCUAC-UgCUCC-----UACU- -5'
14489 3' -54.9 NC_003521.1 + 235591 0.66 0.983517
Target:  5'- uGCGG-GAGGACGAgaGGCGgacucGGGcgGAg -3'
miRNA:   3'- gUGCCgCUCCUGCUa-CUGC-----UCCuaCU- -5'
14489 3' -54.9 NC_003521.1 + 19450 0.66 0.983517
Target:  5'- gACGaaGAGGAgGAcGACGAGGAc-- -3'
miRNA:   3'- gUGCcgCUCCUgCUaCUGCUCCUacu -5'
14489 3' -54.9 NC_003521.1 + 69755 0.66 0.982395
Target:  5'- gGCGGUGGcacaagugcaugaucGGACGGgcgaGcCGGGGGUGAa -3'
miRNA:   3'- gUGCCGCU---------------CCUGCUa---CuGCUCCUACU- -5'
14489 3' -54.9 NC_003521.1 + 148574 0.66 0.981616
Target:  5'- aGCGGCacccaGGGAgGGUcGACG-GGAUGGg -3'
miRNA:   3'- gUGCCGc----UCCUgCUA-CUGCuCCUACU- -5'
14489 3' -54.9 NC_003521.1 + 164898 0.66 0.981616
Target:  5'- gCGCGccGUGAugacGACGAcGAUGAGGAUGAc -3'
miRNA:   3'- -GUGC--CGCUc---CUGCUaCUGCUCCUACU- -5'
14489 3' -54.9 NC_003521.1 + 133705 0.66 0.981616
Target:  5'- gUACGaGCu-GGACGAgGACGAGG-UGGg -3'
miRNA:   3'- -GUGC-CGcuCCUGCUaCUGCUCCuACU- -5'
14489 3' -54.9 NC_003521.1 + 100508 0.66 0.981616
Target:  5'- cCGCgGGCGucGGACGGUGcACGGuGGcgGGa -3'
miRNA:   3'- -GUG-CCGCu-CCUGCUAC-UGCU-CCuaCU- -5'
14489 3' -54.9 NC_003521.1 + 207491 0.66 0.981616
Target:  5'- cUACGGUGccgcccagcGGGugGugccagcaGUGACGuGGGUGAg -3'
miRNA:   3'- -GUGCCGC---------UCCugC--------UACUGCuCCUACU- -5'
14489 3' -54.9 NC_003521.1 + 89639 0.66 0.981616
Target:  5'- cUAgGGCGAGGACGc-GACaguuuauGGGUGAa -3'
miRNA:   3'- -GUgCCGCUCCUGCuaCUGcu-----CCUACU- -5'
14489 3' -54.9 NC_003521.1 + 139544 0.66 0.981616
Target:  5'- uCAUGuGCuugaguAGGAaggaGAUGAUGGGGAUGAu -3'
miRNA:   3'- -GUGC-CGc-----UCCUg---CUACUGCUCCUACU- -5'
14489 3' -54.9 NC_003521.1 + 118926 0.66 0.981417
Target:  5'- cCGCGGCGuGGGCGgcGGCGucccgucAGGGc-- -3'
miRNA:   3'- -GUGCCGCuCCUGCuaCUGC-------UCCUacu -5'
14489 3' -54.9 NC_003521.1 + 195387 0.66 0.979555
Target:  5'- cCACGGCGAGGccaugaccGCGccGACGGcGGGc-- -3'
miRNA:   3'- -GUGCCGCUCC--------UGCuaCUGCU-CCUacu -5'
14489 3' -54.9 NC_003521.1 + 4265 0.66 0.979555
Target:  5'- aCACGGCGAGcACGAaaaccUGagaaGCGAGGGa-- -3'
miRNA:   3'- -GUGCCGCUCcUGCU-----AC----UGCUCCUacu -5'
14489 3' -54.9 NC_003521.1 + 164785 0.66 0.979555
Target:  5'- aCGCGGCGGGcACGGgucGuCGGGGAcGAu -3'
miRNA:   3'- -GUGCCGCUCcUGCUa--CuGCUCCUaCU- -5'
14489 3' -54.9 NC_003521.1 + 167426 0.66 0.979555
Target:  5'- gGCGGCGcagcAGGugGAUGAacucggacaUGAcGAUGAg -3'
miRNA:   3'- gUGCCGC----UCCugCUACU---------GCUcCUACU- -5'
14489 3' -54.9 NC_003521.1 + 143140 0.66 0.978239
Target:  5'- gACGGCGAGGgagugggcguccucgACGAUcccGugGGGGucgGAc -3'
miRNA:   3'- gUGCCGCUCC---------------UGCUA---CugCUCCua-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.