miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14489 5' -57.6 NC_003521.1 + 239431 0.66 0.958293
Target:  5'- uGUCGGCGuuUCGUCguagaaCGU-GUCGGGg -3'
miRNA:   3'- gCAGCCGU--GGCAGaga---GCAgCAGCCC- -5'
14489 5' -57.6 NC_003521.1 + 169452 0.66 0.958293
Target:  5'- gCGUCGGCGgcggcggguUCGUCgccaggcgCgUCGUCGUUGGc -3'
miRNA:   3'- -GCAGCCGU---------GGCAGa-------G-AGCAGCAGCCc -5'
14489 5' -57.6 NC_003521.1 + 212582 0.66 0.95475
Target:  5'- -cUCGGCGCCGUCUuCUuccucCGUCagcgaGGGg -3'
miRNA:   3'- gcAGCCGUGGCAGA-GA-----GCAGcag--CCC- -5'
14489 5' -57.6 NC_003521.1 + 163392 0.66 0.95475
Target:  5'- aCGgCGGCAUCcUCUCggccguggcccCGUCGUCGGc -3'
miRNA:   3'- -GCaGCCGUGGcAGAGa----------GCAGCAGCCc -5'
14489 5' -57.6 NC_003521.1 + 162355 0.66 0.95475
Target:  5'- gCGUgGGCGcgcagccccCCGUCUUcgGUCGcUCGGGu -3'
miRNA:   3'- -GCAgCCGU---------GGCAGAGagCAGC-AGCCC- -5'
14489 5' -57.6 NC_003521.1 + 106363 0.66 0.949848
Target:  5'- gCGguagCGGggaaccgccaucucCGCCGcCUCcucCGUCGUCGGGu -3'
miRNA:   3'- -GCa---GCC--------------GUGGCaGAGa--GCAGCAGCCC- -5'
14489 5' -57.6 NC_003521.1 + 99875 0.66 0.947067
Target:  5'- uGgCGGcCACCGUCUCcauguagggGUCGUgCGGGu -3'
miRNA:   3'- gCaGCC-GUGGCAGAGag-------CAGCA-GCCC- -5'
14489 5' -57.6 NC_003521.1 + 100904 0.66 0.942922
Target:  5'- aGUCGGCGagggugggcuCCG-CUCg---CGUCGGGa -3'
miRNA:   3'- gCAGCCGU----------GGCaGAGagcaGCAGCCC- -5'
14489 5' -57.6 NC_003521.1 + 63345 0.66 0.942922
Target:  5'- uCGUCGGCGCCGcgCgauacauaCGauaGUCGGGg -3'
miRNA:   3'- -GCAGCCGUGGCa-Gaga-----GCag-CAGCCC- -5'
14489 5' -57.6 NC_003521.1 + 11562 0.66 0.942922
Target:  5'- --cCGGCGCCGUCgugCGcCGgacucugCGGGg -3'
miRNA:   3'- gcaGCCGUGGCAGagaGCaGCa------GCCC- -5'
14489 5' -57.6 NC_003521.1 + 192132 0.66 0.942922
Target:  5'- uCGUCGGCuCCGUCgg-CGUcCG-CGGa -3'
miRNA:   3'- -GCAGCCGuGGCAGagaGCA-GCaGCCc -5'
14489 5' -57.6 NC_003521.1 + 188001 0.66 0.942922
Target:  5'- uGUCGaucuccacCGCCGUCUcCUCGcaggCGUCGGa -3'
miRNA:   3'- gCAGCc-------GUGGCAGA-GAGCa---GCAGCCc -5'
14489 5' -57.6 NC_003521.1 + 190408 0.67 0.93586
Target:  5'- uGUCGGCGauGUCUCugcccuacguccaccUCGUCGguggugUGGGc -3'
miRNA:   3'- gCAGCCGUggCAGAG---------------AGCAGCa-----GCCC- -5'
14489 5' -57.6 NC_003521.1 + 5263 0.67 0.934011
Target:  5'- gGUCGGUucuCUGUCUgcUGUCGaCGGGu -3'
miRNA:   3'- gCAGCCGu--GGCAGAgaGCAGCaGCCC- -5'
14489 5' -57.6 NC_003521.1 + 127738 0.67 0.933544
Target:  5'- gCGUUGGCACgGUgCUCUugaagagccgcagCGUCuccucguaGUCGGGc -3'
miRNA:   3'- -GCAGCCGUGgCA-GAGA-------------GCAG--------CAGCCC- -5'
14489 5' -57.6 NC_003521.1 + 221657 0.67 0.933544
Target:  5'- aCGUCGGCcaccagcGCCGUgCUCUCGgucaccaCGcCGuGGg -3'
miRNA:   3'- -GCAGCCG-------UGGCA-GAGAGCa------GCaGC-CC- -5'
14489 5' -57.6 NC_003521.1 + 160344 0.67 0.924776
Target:  5'- uCGUCGuuAUCGUCgucguccuccucuucCUCGUCGUCGuGGc -3'
miRNA:   3'- -GCAGCcgUGGCAGa--------------GAGCAGCAGC-CC- -5'
14489 5' -57.6 NC_003521.1 + 211390 0.67 0.924269
Target:  5'- cCGUCaGGCGCCGgCUCUCGUgcagcaGcCGGc -3'
miRNA:   3'- -GCAG-CCGUGGCaGAGAGCAg-----CaGCCc -5'
14489 5' -57.6 NC_003521.1 + 123475 0.67 0.924269
Target:  5'- gCGUCaGCuCCGUgUC-CGUCGccggCGGGg -3'
miRNA:   3'- -GCAGcCGuGGCAgAGaGCAGCa---GCCC- -5'
14489 5' -57.6 NC_003521.1 + 207007 0.67 0.916953
Target:  5'- uCGUCGGUuacuucgaGCCG-CUCUCGUCacucuaccugcgCGGGc -3'
miRNA:   3'- -GCAGCCG--------UGGCaGAGAGCAGca----------GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.