miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1449 3' -61 NC_001335.1 + 34150 0.66 0.409005
Target:  5'- gACGACGaguuCUG-GCGuCUGGCCaaGGAGGg -3'
miRNA:   3'- aUGCUGC----GACuCGC-GGCCGG--UCUCCg -5'
1449 3' -61 NC_001335.1 + 46990 0.66 0.409005
Target:  5'- gACGugGCcGGuaCGCCGGa-AGAGGCu -3'
miRNA:   3'- aUGCugCGaCUc-GCGGCCggUCUCCG- -5'
1449 3' -61 NC_001335.1 + 2313 0.66 0.409005
Target:  5'- cGCGAgGUcggcaaggagUGAGCuggGCCGGCuCAGGccGGCg -3'
miRNA:   3'- aUGCUgCG----------ACUCG---CGGCCG-GUCU--CCG- -5'
1449 3' -61 NC_001335.1 + 44753 0.66 0.4081
Target:  5'- cUGCGAagaucuucgaucuCGCUGAGaGUgagugguauuCGGCUAGGGGCc -3'
miRNA:   3'- -AUGCU-------------GCGACUCgCG----------GCCGGUCUCCG- -5'
1449 3' -61 NC_001335.1 + 22593 0.66 0.392021
Target:  5'- aGCaGACGU--GGUGCCGGCCAGcucgccgauacgcucGGCg -3'
miRNA:   3'- aUG-CUGCGacUCGCGGCCGGUCu--------------CCG- -5'
1449 3' -61 NC_001335.1 + 24371 0.66 0.39114
Target:  5'- aGCGGCGaacGuAGCGCCGacaGCgCGGAGGUc -3'
miRNA:   3'- aUGCUGCga-C-UCGCGGC---CG-GUCUCCG- -5'
1449 3' -61 NC_001335.1 + 29174 0.67 0.348764
Target:  5'- cUACGGCGgUgGGGCGaaGGCUcucgcuGAGGCa -3'
miRNA:   3'- -AUGCUGCgA-CUCGCggCCGGu-----CUCCG- -5'
1449 3' -61 NC_001335.1 + 24886 0.67 0.348764
Target:  5'- cGCGACGUaGAgGCGCUGacGCCuGAGGa -3'
miRNA:   3'- aUGCUGCGaCU-CGCGGC--CGGuCUCCg -5'
1449 3' -61 NC_001335.1 + 1161 0.67 0.348764
Target:  5'- gGCGGCGUaGgcGGCGUCGGaggCGGGGGUg -3'
miRNA:   3'- aUGCUGCGaC--UCGCGGCCg--GUCUCCG- -5'
1449 3' -61 NC_001335.1 + 27380 0.67 0.339892
Target:  5'- gACGAgGCccgUGAccGCGCCgaGGCCAaccucccGAGGCg -3'
miRNA:   3'- aUGCUgCG---ACU--CGCGG--CCGGU-------CUCCG- -5'
1449 3' -61 NC_001335.1 + 8611 0.67 0.332755
Target:  5'- --aGuCGCcGAGCGCCaGGCCGucGAGGg -3'
miRNA:   3'- augCuGCGaCUCGCGG-CCGGU--CUCCg -5'
1449 3' -61 NC_001335.1 + 48267 0.67 0.332755
Target:  5'- uUGCGGCGCUc-GCGCCguaccuugucgcGGCCGGccGGCc -3'
miRNA:   3'- -AUGCUGCGAcuCGCGG------------CCGGUCu-CCG- -5'
1449 3' -61 NC_001335.1 + 16259 0.67 0.331969
Target:  5'- -cCGGCGCUGGcguagucGCGCuCGGCaUGGAcGGCa -3'
miRNA:   3'- auGCUGCGACU-------CGCG-GCCG-GUCU-CCG- -5'
1449 3' -61 NC_001335.1 + 33896 0.67 0.324955
Target:  5'- gGCGGCGUucgUGA-CGCCGGCC---GGCa -3'
miRNA:   3'- aUGCUGCG---ACUcGCGGCCGGucuCCG- -5'
1449 3' -61 NC_001335.1 + 48092 0.67 0.317292
Target:  5'- aGCGGCGCgGA-CGCCGGaaucggAGAGGUa -3'
miRNA:   3'- aUGCUGCGaCUcGCGGCCgg----UCUCCG- -5'
1449 3' -61 NC_001335.1 + 272 0.68 0.309766
Target:  5'- gGCGGCGCgauaaGAGCGCCa-CCAGGcGCu -3'
miRNA:   3'- aUGCUGCGa----CUCGCGGccGGUCUcCG- -5'
1449 3' -61 NC_001335.1 + 24130 0.68 0.309766
Target:  5'- gGCGGUGCUG-GCGCucgCGGCCAGGcguGGUu -3'
miRNA:   3'- aUGCUGCGACuCGCG---GCCGGUCU---CCG- -5'
1449 3' -61 NC_001335.1 + 48337 0.68 0.309021
Target:  5'- gUACGGCGC-GAGCGCCgcaagguGGuCCAcGcGGCa -3'
miRNA:   3'- -AUGCUGCGaCUCGCGG-------CC-GGU-CuCCG- -5'
1449 3' -61 NC_001335.1 + 6802 0.68 0.288006
Target:  5'- gGCGACGUUGAucGCGCUcuCC-GAGGCa -3'
miRNA:   3'- aUGCUGCGACU--CGCGGccGGuCUCCG- -5'
1449 3' -61 NC_001335.1 + 1694 0.68 0.281025
Target:  5'- aACGGCGCUccGacaGCCGGCCuc-GGCa -3'
miRNA:   3'- aUGCUGCGAcuCg--CGGCCGGucuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.