miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1449 3' -61 NC_001335.1 + 8509 1.08 0.000277
Target:  5'- cUACGACGCUGAGCGCCGGCCAGAGGCc -3'
miRNA:   3'- -AUGCUGCGACUCGCGGCCGGUCUCCG- -5'
1449 3' -61 NC_001335.1 + 50744 0.74 0.10327
Target:  5'- aGCGAC---GAGuCGUCGGCCGGGGGCg -3'
miRNA:   3'- aUGCUGcgaCUC-GCGGCCGGUCUCCG- -5'
1449 3' -61 NC_001335.1 + 7491 0.72 0.151191
Target:  5'- gUACGACGCgcugGaAGCGCCGGCCGacaccccGGUc -3'
miRNA:   3'- -AUGCUGCGa---C-UCGCGGCCGGUcu-----CCG- -5'
1449 3' -61 NC_001335.1 + 34462 0.72 0.16381
Target:  5'- gUACGACG-UGAGCcgcauCCGGCCgcaAGGGGCc -3'
miRNA:   3'- -AUGCUGCgACUCGc----GGCCGG---UCUCCG- -5'
1449 3' -61 NC_001335.1 + 12609 0.71 0.186952
Target:  5'- gAUGGCGCUgaucGAGCGCCGGCUccagcagaucGAGcGCa -3'
miRNA:   3'- aUGCUGCGA----CUCGCGGCCGGu---------CUC-CG- -5'
1449 3' -61 NC_001335.1 + 1223 0.7 0.202183
Target:  5'- aACGGC----AGCGCCGGuaCCGGAGGCg -3'
miRNA:   3'- aUGCUGcgacUCGCGGCC--GGUCUCCG- -5'
1449 3' -61 NC_001335.1 + 32870 0.7 0.204294
Target:  5'- gACGGCGCggucucaggcucagGAGCcgggGCCGGCucgggcugggCAGGGGCg -3'
miRNA:   3'- aUGCUGCGa-------------CUCG----CGGCCG----------GUCUCCG- -5'
1449 3' -61 NC_001335.1 + 44207 0.7 0.21848
Target:  5'- aGgGugGCUGuucGCGCagaGGUguGAGGCg -3'
miRNA:   3'- aUgCugCGACu--CGCGg--CCGguCUCCG- -5'
1449 3' -61 NC_001335.1 + 17145 0.69 0.235289
Target:  5'- -cCGGCGCUG-GCGacggcccUCGGCCAGgucgcAGGCg -3'
miRNA:   3'- auGCUGCGACuCGC-------GGCCGGUC-----UCCG- -5'
1449 3' -61 NC_001335.1 + 37961 0.69 0.241943
Target:  5'- gACGACGCcgguaugGAGUucGcCCGGUCGGuGGCg -3'
miRNA:   3'- aUGCUGCGa------CUCG--C-GGCCGGUCuCCG- -5'
1449 3' -61 NC_001335.1 + 14402 0.69 0.241943
Target:  5'- gUugGACG---AGCGUCGGCCAcaccagccGAGGCa -3'
miRNA:   3'- -AugCUGCgacUCGCGGCCGGU--------CUCCG- -5'
1449 3' -61 NC_001335.1 + 34275 0.69 0.248127
Target:  5'- -cCGGCGgUGuGCGCCGGUCGGc-GCg -3'
miRNA:   3'- auGCUGCgACuCGCGGCCGGUCucCG- -5'
1449 3' -61 NC_001335.1 + 52212 0.69 0.260888
Target:  5'- aUGCGAUGCgaGAGCGCCGcGgCAcGcGGCu -3'
miRNA:   3'- -AUGCUGCGa-CUCGCGGC-CgGU-CuCCG- -5'
1449 3' -61 NC_001335.1 + 17399 0.68 0.274179
Target:  5'- aGCaACGCUGAccagaGCCuGcGCCAGGGGCa -3'
miRNA:   3'- aUGcUGCGACUcg---CGG-C-CGGUCUCCG- -5'
1449 3' -61 NC_001335.1 + 16926 0.68 0.281025
Target:  5'- cACGGCGCUca-CGCCGGCCuuccAGAcgcuGGCg -3'
miRNA:   3'- aUGCUGCGAcucGCGGCCGG----UCU----CCG- -5'
1449 3' -61 NC_001335.1 + 1694 0.68 0.281025
Target:  5'- aACGGCGCUccGacaGCCGGCCuc-GGCa -3'
miRNA:   3'- aUGCUGCGAcuCg--CGGCCGGucuCCG- -5'
1449 3' -61 NC_001335.1 + 6802 0.68 0.288006
Target:  5'- gGCGACGUUGAucGCGCUcuCC-GAGGCa -3'
miRNA:   3'- aUGCUGCGACU--CGCGGccGGuCUCCG- -5'
1449 3' -61 NC_001335.1 + 48337 0.68 0.309021
Target:  5'- gUACGGCGC-GAGCGCCgcaagguGGuCCAcGcGGCa -3'
miRNA:   3'- -AUGCUGCGaCUCGCGG-------CC-GGU-CuCCG- -5'
1449 3' -61 NC_001335.1 + 24130 0.68 0.309766
Target:  5'- gGCGGUGCUG-GCGCucgCGGCCAGGcguGGUu -3'
miRNA:   3'- aUGCUGCGACuCGCG---GCCGGUCU---CCG- -5'
1449 3' -61 NC_001335.1 + 272 0.68 0.309766
Target:  5'- gGCGGCGCgauaaGAGCGCCa-CCAGGcGCu -3'
miRNA:   3'- aUGCUGCGa----CUCGCGGccGGUCUcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.