miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14491 3' -56.1 NC_003521.1 + 180815 0.66 0.959603
Target:  5'- -gGUGCuGUCGcgcuGCUGCaGGCUGCcggugaagaGCCGg -3'
miRNA:   3'- caCACG-UAGC----UGAUGcCCGACG---------UGGC- -5'
14491 3' -56.1 NC_003521.1 + 184859 0.66 0.959603
Target:  5'- --cUGCAcaUCGGCguggugGGGCUGCACaCGg -3'
miRNA:   3'- cacACGU--AGCUGaug---CCCGACGUG-GC- -5'
14491 3' -56.1 NC_003521.1 + 171470 0.66 0.959603
Target:  5'- cUGUGC-UCGcGCUgucagACGGGCgaGUACCGc -3'
miRNA:   3'- cACACGuAGC-UGA-----UGCCCGa-CGUGGC- -5'
14491 3' -56.1 NC_003521.1 + 13850 0.66 0.955986
Target:  5'- uUG-GC-UCGGCgcgggggucucUGCGGGCgGCGCCGc -3'
miRNA:   3'- cACaCGuAGCUG-----------AUGCCCGaCGUGGC- -5'
14491 3' -56.1 NC_003521.1 + 85355 0.66 0.955986
Target:  5'- cUG-GCGgaaccaGACcucgACGGGCUGCugCGa -3'
miRNA:   3'- cACaCGUag----CUGa---UGCCCGACGugGC- -5'
14491 3' -56.1 NC_003521.1 + 169451 0.66 0.955986
Target:  5'- ---gGCGUCGGCggcgGCGGGUUcGuCGCCa -3'
miRNA:   3'- cacaCGUAGCUGa---UGCCCGA-C-GUGGc -5'
14491 3' -56.1 NC_003521.1 + 149650 0.66 0.955986
Target:  5'- -gGUGC-UCucCUgguGCGGGCUGC-CCGa -3'
miRNA:   3'- caCACGuAGcuGA---UGCCCGACGuGGC- -5'
14491 3' -56.1 NC_003521.1 + 152014 0.66 0.952155
Target:  5'- -aGUGCAUCaGGUUGuCGGGCUuCACCa -3'
miRNA:   3'- caCACGUAG-CUGAU-GCCCGAcGUGGc -5'
14491 3' -56.1 NC_003521.1 + 58915 0.66 0.952155
Target:  5'- aUGcGCAggaugagCGAUc-CGGGCUGCGCCu -3'
miRNA:   3'- cACaCGUa------GCUGauGCCCGACGUGGc -5'
14491 3' -56.1 NC_003521.1 + 191084 0.66 0.948107
Target:  5'- cGUG-GUggCGGCgGCGGGCUGCGucUCGu -3'
miRNA:   3'- -CACaCGuaGCUGaUGCCCGACGU--GGC- -5'
14491 3' -56.1 NC_003521.1 + 168602 0.66 0.948107
Target:  5'- aUG-GaCAUgGGCUGCuGGGCgUGCGCCa -3'
miRNA:   3'- cACaC-GUAgCUGAUG-CCCG-ACGUGGc -5'
14491 3' -56.1 NC_003521.1 + 19652 0.66 0.943838
Target:  5'- ----cCAUCGugUGCcugGGGCUGCugCGc -3'
miRNA:   3'- cacacGUAGCugAUG---CCCGACGugGC- -5'
14491 3' -56.1 NC_003521.1 + 98150 0.67 0.939346
Target:  5'- cUGcUGCcgccGUCGcuGCUgACGGcGCUGCGCCGa -3'
miRNA:   3'- cAC-ACG----UAGC--UGA-UGCC-CGACGUGGC- -5'
14491 3' -56.1 NC_003521.1 + 150036 0.67 0.934629
Target:  5'- -cGUGCG-CGACgccacGCUGCACCGg -3'
miRNA:   3'- caCACGUaGCUGaugccCGACGUGGC- -5'
14491 3' -56.1 NC_003521.1 + 88459 0.67 0.934629
Target:  5'- ---cGCcUCGGCguCGGGCUGCAgCGa -3'
miRNA:   3'- cacaCGuAGCUGauGCCCGACGUgGC- -5'
14491 3' -56.1 NC_003521.1 + 124052 0.67 0.934629
Target:  5'- -cGUGCcgCGGCgGCGGcccacGCUGCACa- -3'
miRNA:   3'- caCACGuaGCUGaUGCC-----CGACGUGgc -5'
14491 3' -56.1 NC_003521.1 + 181525 0.67 0.929687
Target:  5'- gGUGUGCGcgaaGACUaGCGGGCcGCcgcgACCGc -3'
miRNA:   3'- -CACACGUag--CUGA-UGCCCGaCG----UGGC- -5'
14491 3' -56.1 NC_003521.1 + 145855 0.67 0.929687
Target:  5'- ---cGCGUcucugggccCGGCgGCGGGCgGCGCCGa -3'
miRNA:   3'- cacaCGUA---------GCUGaUGCCCGaCGUGGC- -5'
14491 3' -56.1 NC_003521.1 + 184166 0.67 0.924517
Target:  5'- -gGUGCG-CGA--GCGGGaggUGCACCGg -3'
miRNA:   3'- caCACGUaGCUgaUGCCCg--ACGUGGC- -5'
14491 3' -56.1 NC_003521.1 + 22965 0.67 0.924517
Target:  5'- -gGUGCAcgUCGuGCUGCugGGGCUcuGCGCCu -3'
miRNA:   3'- caCACGU--AGC-UGAUG--CCCGA--CGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.