miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14491 5' -53.6 NC_003521.1 + 119598 0.66 0.987146
Target:  5'- gGCGGCgGGuGCaGCGUc--UCGUGCu -3'
miRNA:   3'- gCGUCGaCCuCGaCGCGuuaAGCAUG- -5'
14491 5' -53.6 NC_003521.1 + 157042 0.66 0.987146
Target:  5'- gCGCGGUcGGAGgaGCGCGg--CGggggGCg -3'
miRNA:   3'- -GCGUCGaCCUCgaCGCGUuaaGCa---UG- -5'
14491 5' -53.6 NC_003521.1 + 215657 0.66 0.987146
Target:  5'- uCGCGGCgGGAGCagcgaaaGCGCGAccagaacgcCGUACc -3'
miRNA:   3'- -GCGUCGaCCUCGa------CGCGUUaa-------GCAUG- -5'
14491 5' -53.6 NC_003521.1 + 70657 0.66 0.987146
Target:  5'- uGCGGCUGGuGCUGCaGCug--C-UGCu -3'
miRNA:   3'- gCGUCGACCuCGACG-CGuuaaGcAUG- -5'
14491 5' -53.6 NC_003521.1 + 100075 0.66 0.987146
Target:  5'- uGCAGCaGGuAGUcggUGUGCAugagcucgUCGUGCg -3'
miRNA:   3'- gCGUCGaCC-UCG---ACGCGUua------AGCAUG- -5'
14491 5' -53.6 NC_003521.1 + 108841 0.66 0.985515
Target:  5'- gCGCAGCUccAGCUGCGUGAacacgCgGUGCa -3'
miRNA:   3'- -GCGUCGAccUCGACGCGUUaa---G-CAUG- -5'
14491 5' -53.6 NC_003521.1 + 100754 0.66 0.985515
Target:  5'- cCG-AGCUGG-GCcugGCGCAc-UCGUGCa -3'
miRNA:   3'- -GCgUCGACCuCGa--CGCGUuaAGCAUG- -5'
14491 5' -53.6 NC_003521.1 + 160509 0.66 0.985515
Target:  5'- cCGCGGCgggaggagGGGGCgGCaGCcuccUCGUACg -3'
miRNA:   3'- -GCGUCGa-------CCUCGaCG-CGuua-AGCAUG- -5'
14491 5' -53.6 NC_003521.1 + 113577 0.66 0.985515
Target:  5'- aCGCGG-UGGGGCUGgGCc--UCGgggGCa -3'
miRNA:   3'- -GCGUCgACCUCGACgCGuuaAGCa--UG- -5'
14491 5' -53.6 NC_003521.1 + 59246 0.66 0.985515
Target:  5'- aGguGaacgUGGGGCUGCuGCGggcGUUCGUAa -3'
miRNA:   3'- gCguCg---ACCUCGACG-CGU---UAAGCAUg -5'
14491 5' -53.6 NC_003521.1 + 152533 0.66 0.983731
Target:  5'- gGCGGCc----CUGCGcCAGUUCGUGCa -3'
miRNA:   3'- gCGUCGaccucGACGC-GUUAAGCAUG- -5'
14491 5' -53.6 NC_003521.1 + 232812 0.66 0.983731
Target:  5'- gGCGGuCUGGAGCUacgGCGCugccccgGUACc -3'
miRNA:   3'- gCGUC-GACCUCGA---CGCGuuaag--CAUG- -5'
14491 5' -53.6 NC_003521.1 + 167464 0.66 0.983731
Target:  5'- aGCGuGCUGaGGGCcgUGCGCGGcgCGUAg -3'
miRNA:   3'- gCGU-CGAC-CUCG--ACGCGUUaaGCAUg -5'
14491 5' -53.6 NC_003521.1 + 84918 0.66 0.983731
Target:  5'- gCGUAGCcGGccuGCU-CGCAGggCGUGCg -3'
miRNA:   3'- -GCGUCGaCCu--CGAcGCGUUaaGCAUG- -5'
14491 5' -53.6 NC_003521.1 + 17004 0.66 0.983731
Target:  5'- uCGaCAGCaGGAGCUGCuGCAAcagCGg-- -3'
miRNA:   3'- -GC-GUCGaCCUCGACG-CGUUaa-GCaug -5'
14491 5' -53.6 NC_003521.1 + 44360 0.66 0.982583
Target:  5'- aCGC-GCUGGGGCUGCGgcccacgcccgaggcCGAg--GUGCg -3'
miRNA:   3'- -GCGuCGACCUCGACGC---------------GUUaagCAUG- -5'
14491 5' -53.6 NC_003521.1 + 209383 0.66 0.981785
Target:  5'- aCGCcguGCUGGcGCUGCGCA--UCa--- -3'
miRNA:   3'- -GCGu--CGACCuCGACGCGUuaAGcaug -5'
14491 5' -53.6 NC_003521.1 + 8052 0.66 0.981785
Target:  5'- aGCuGCUGaGGGCaGCGCAGacCGUAg -3'
miRNA:   3'- gCGuCGAC-CUCGaCGCGUUaaGCAUg -5'
14491 5' -53.6 NC_003521.1 + 33918 0.66 0.981785
Target:  5'- aCGCGGUgaucuucacaUGGugcuGCUGUGCGg--CGUGCg -3'
miRNA:   3'- -GCGUCG----------ACCu---CGACGCGUuaaGCAUG- -5'
14491 5' -53.6 NC_003521.1 + 52583 0.66 0.981785
Target:  5'- uGCGGCUGGcucaaccGCUGCuGCGAccgcUUCG-ACg -3'
miRNA:   3'- gCGUCGACCu------CGACG-CGUU----AAGCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.