miRNA display CGI


Results 21 - 40 of 623 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14493 3' -64 NC_003521.1 + 61851 0.66 0.72045
Target:  5'- aCCGCCGaaauCCACCGCCgcguCUUGuG-GUCGCa -3'
miRNA:   3'- -GGCGGU----GGUGGCGG----GAGC-CaCGGCGg -5'
14493 3' -64 NC_003521.1 + 103347 0.66 0.72045
Target:  5'- gCCGCgacaCGCCGgCGCCCuuccacucgUCGGUG-CGCg -3'
miRNA:   3'- -GGCG----GUGGUgGCGGG---------AGCCACgGCGg -5'
14493 3' -64 NC_003521.1 + 49567 0.66 0.72045
Target:  5'- gCaCCACCuGCCGCgugggCCgCGGcGCCGCCu -3'
miRNA:   3'- gGcGGUGG-UGGCG-----GGaGCCaCGGCGG- -5'
14493 3' -64 NC_003521.1 + 188315 0.66 0.72045
Target:  5'- uUCGCCGCgcucucUACCGCCCaccuugUCGucGUCGCCg -3'
miRNA:   3'- -GGCGGUG------GUGGCGGG------AGCcaCGGCGG- -5'
14493 3' -64 NC_003521.1 + 6032 0.66 0.72045
Target:  5'- gUCGUCguACCACuCGCUCUCGG-GCgGUa -3'
miRNA:   3'- -GGCGG--UGGUG-GCGGGAGCCaCGgCGg -5'
14493 3' -64 NC_003521.1 + 127843 0.66 0.72045
Target:  5'- gCC-CCGgCGCCaGCCCgUCGGgcagGuuGCCc -3'
miRNA:   3'- -GGcGGUgGUGG-CGGG-AGCCa---CggCGG- -5'
14493 3' -64 NC_003521.1 + 148875 0.66 0.72045
Target:  5'- aCGCCAgC-CUGgCCUCGGccGUgGCCg -3'
miRNA:   3'- gGCGGUgGuGGCgGGAGCCa-CGgCGG- -5'
14493 3' -64 NC_003521.1 + 46248 0.66 0.72045
Target:  5'- aCgGCCucgaCGUCGCCCUCGGUGgCGgUa -3'
miRNA:   3'- -GgCGGug--GUGGCGGGAGCCACgGCgG- -5'
14493 3' -64 NC_003521.1 + 149626 0.66 0.72045
Target:  5'- gUGcCCACgACgCGCCCgCGGUaCCGCUu -3'
miRNA:   3'- gGC-GGUGgUG-GCGGGaGCCAcGGCGG- -5'
14493 3' -64 NC_003521.1 + 2110 0.66 0.72045
Target:  5'- gCUGCCgguGCUACC-UCCUCuGGUcaacgucccacgGCCGCCg -3'
miRNA:   3'- -GGCGG---UGGUGGcGGGAG-CCA------------CGGCGG- -5'
14493 3' -64 NC_003521.1 + 28260 0.66 0.72045
Target:  5'- aCCGCUcUCACCaCCCUCccccugGCCGUCg -3'
miRNA:   3'- -GGCGGuGGUGGcGGGAGcca---CGGCGG- -5'
14493 3' -64 NC_003521.1 + 152686 0.66 0.72045
Target:  5'- -aGCCGCU-CCGCggCUCGGUGCuCGgCa -3'
miRNA:   3'- ggCGGUGGuGGCGg-GAGCCACG-GCgG- -5'
14493 3' -64 NC_003521.1 + 202338 0.66 0.72045
Target:  5'- gCUGCCgguGCUACC-UCCUCuGGUcaacgucccacgGCCGCCg -3'
miRNA:   3'- -GGCGG---UGGUGGcGGGAG-CCA------------CGGCGG- -5'
14493 3' -64 NC_003521.1 + 157068 0.66 0.72045
Target:  5'- gCGCCGCCACCcugucccagGCCCcccgCGGUGaggaggaGCa -3'
miRNA:   3'- gGCGGUGGUGG---------CGGGa---GCCACgg-----CGg -5'
14493 3' -64 NC_003521.1 + 41446 0.66 0.72045
Target:  5'- aCCcCCGCCGCCGUCUacaccaCGGUgGUgGCCc -3'
miRNA:   3'- -GGcGGUGGUGGCGGGa-----GCCA-CGgCGG- -5'
14493 3' -64 NC_003521.1 + 170988 0.66 0.72045
Target:  5'- gCGUCAUCgACCuGCCgCUCuGGUGCCugugucGCCu -3'
miRNA:   3'- gGCGGUGG-UGG-CGG-GAG-CCACGG------CGG- -5'
14493 3' -64 NC_003521.1 + 127234 0.66 0.72045
Target:  5'- gCCGCCcCCGuuGCCCcCGaG-GCCcaGCCc -3'
miRNA:   3'- -GGCGGuGGUggCGGGaGC-CaCGG--CGG- -5'
14493 3' -64 NC_003521.1 + 188469 0.66 0.719549
Target:  5'- gCGCCuCCgagcuacgagcagGCCGUgggCCUgGGUccGCCGCCg -3'
miRNA:   3'- gGCGGuGG-------------UGGCG---GGAgCCA--CGGCGG- -5'
14493 3' -64 NC_003521.1 + 109911 0.66 0.718648
Target:  5'- aCCGCCGaCGCCGugaCCCgacgacgagagaCGGUGCCGaCg -3'
miRNA:   3'- -GGCGGUgGUGGC---GGGa-----------GCCACGGCgG- -5'
14493 3' -64 NC_003521.1 + 16268 0.66 0.717746
Target:  5'- gCGCUGCCGCugguuccugcugggCGCCgUgGGUGCCuaccgGCCc -3'
miRNA:   3'- gGCGGUGGUG--------------GCGGgAgCCACGG-----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.