miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14493 5' -50.3 NC_003521.1 + 156965 0.7 0.984134
Target:  5'- gGGUCGAgGaCGGAGGAggaggagucGAUGGAGGg -3'
miRNA:   3'- gCCAGCUgUgGUCUUCUa--------CUACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 160448 0.71 0.972778
Target:  5'- aGGcgcgaCGGCACggCAGAGGAUGAugUGGGAGg -3'
miRNA:   3'- gCCa----GCUGUG--GUCUUCUACU--ACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 168096 0.71 0.973858
Target:  5'- cCGGUCGgaugcccuccaacacGCGCCcGggGuccUGGUGGAAGa -3'
miRNA:   3'- -GCCAGC---------------UGUGGuCuuCu--ACUACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 168670 0.67 0.998719
Target:  5'- ---aCGGCGCCGGAGGucccUGGUGGcAGg -3'
miRNA:   3'- gccaGCUGUGGUCUUCu---ACUACCuUC- -5'
14493 5' -50.3 NC_003521.1 + 170176 0.69 0.990276
Target:  5'- uGGUCGACuuCGGAGcGGUGGugccggUGGAGGu -3'
miRNA:   3'- gCCAGCUGugGUCUU-CUACU------ACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 174462 0.68 0.995143
Target:  5'- uGGgcgUGGCACUugaccuccucGGGAGAacacUGAUGGAAGg -3'
miRNA:   3'- gCCa--GCUGUGG----------UCUUCU----ACUACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 177772 0.66 0.99924
Target:  5'- gCGGUCGuCGCCAGGGccGAcggggccuguccgcUGGUGGGc- -3'
miRNA:   3'- -GCCAGCuGUGGUCUU--CU--------------ACUACCUuc -5'
14493 5' -50.3 NC_003521.1 + 177951 0.71 0.977867
Target:  5'- cCGGUCGGUACCGGGAGG-GAUGucuGAGGc -3'
miRNA:   3'- -GCCAGCUGUGGUCUUCUaCUAC---CUUC- -5'
14493 5' -50.3 NC_003521.1 + 178030 0.66 0.999528
Target:  5'- aCGGUCgucaaaGACGCCGGGcccgucAGGcUGGUGGGGa -3'
miRNA:   3'- -GCCAG------CUGUGGUCU------UCU-ACUACCUUc -5'
14493 5' -50.3 NC_003521.1 + 181862 0.69 0.988813
Target:  5'- aCGGcgCGcuucuucGCGCCAGAGGGccUGGUGGAGu -3'
miRNA:   3'- -GCCa-GC-------UGUGGUCUUCU--ACUACCUUc -5'
14493 5' -50.3 NC_003521.1 + 193265 0.76 0.849856
Target:  5'- aCGGUCGGCugCGGAgcGGGUGccGGGAc -3'
miRNA:   3'- -GCCAGCUGugGUCU--UCUACuaCCUUc -5'
14493 5' -50.3 NC_003521.1 + 193301 0.66 0.999528
Target:  5'- gGaGUCGGCGC--GggGGUGGUGGGc- -3'
miRNA:   3'- gC-CAGCUGUGguCuuCUACUACCUuc -5'
14493 5' -50.3 NC_003521.1 + 199743 0.68 0.99695
Target:  5'- gCGGUCcgccCACCAGGAuGAUGAgcagguugaGGAAGg -3'
miRNA:   3'- -GCCAGcu--GUGGUCUU-CUACUa--------CCUUC- -5'
14493 5' -50.3 NC_003521.1 + 200567 0.68 0.996423
Target:  5'- gCGGa--GCGCgAGAugcAGAUGAUGGAGGa -3'
miRNA:   3'- -GCCagcUGUGgUCU---UCUACUACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 212388 0.7 0.985891
Target:  5'- aGG-CGAgACCAcGGAGGUG-UGGAAGc -3'
miRNA:   3'- gCCaGCUgUGGU-CUUCUACuACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 213265 0.66 0.999528
Target:  5'- aCGcGUCGACcgcCCGGAcGAcGGUGGAGa -3'
miRNA:   3'- -GC-CAGCUGu--GGUCUuCUaCUACCUUc -5'
14493 5' -50.3 NC_003521.1 + 228990 0.69 0.992548
Target:  5'- aGGUccCGAUACCAGccguGGAUGGucuguggcacaUGGAAGa -3'
miRNA:   3'- gCCA--GCUGUGGUCu---UCUACU-----------ACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 239091 0.67 0.998462
Target:  5'- gCGGUCGcgggaggaACGCgAGggGAggggaccgGAUGGAGu -3'
miRNA:   3'- -GCCAGC--------UGUGgUCuuCUa-------CUACCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.