Results 41 - 58 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14493 | 5' | -50.3 | NC_003521.1 | + | 6835 | 0.69 | 0.993513 |
Target: 5'- aGGagGGCGCCgAGGAGGUuguaGUGGGAGg -3' miRNA: 3'- gCCagCUGUGG-UCUUCUAc---UACCUUC- -5' |
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14493 | 5' | -50.3 | NC_003521.1 | + | 151103 | 0.76 | 0.833571 |
Target: 5'- gGGUCGGgcCGCUGGggGAUGgcGGggGg -3' miRNA: 3'- gCCAGCU--GUGGUCuuCUACuaCCuuC- -5' |
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14493 | 5' | -50.3 | NC_003521.1 | + | 94701 | 0.75 | 0.886984 |
Target: 5'- uGGcCGACACCAGAuAGAcGGUGGGcAGg -3' miRNA: 3'- gCCaGCUGUGGUCU-UCUaCUACCU-UC- -5' |
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14493 | 5' | -50.3 | NC_003521.1 | + | 37899 | 0.72 | 0.960162 |
Target: 5'- -cGUCGuACAUCGGAAGcgGAUGGgcGg -3' miRNA: 3'- gcCAGC-UGUGGUCUUCuaCUACCuuC- -5' |
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14493 | 5' | -50.3 | NC_003521.1 | + | 86315 | 0.71 | 0.966893 |
Target: 5'- aGGUUGGcCGCCAGcaccuGGAUGcUGGAGGu -3' miRNA: 3'- gCCAGCU-GUGGUCu----UCUACuACCUUC- -5' |
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14493 | 5' | -50.3 | NC_003521.1 | + | 177951 | 0.71 | 0.977867 |
Target: 5'- cCGGUCGGUACCGGGAGG-GAUGucuGAGGc -3' miRNA: 3'- -GCCAGCUGUGGUCUUCUaCUAC---CUUC- -5' |
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14493 | 5' | -50.3 | NC_003521.1 | + | 119802 | 0.7 | 0.980131 |
Target: 5'- aGGUCGGCGCCGccGAGGAggucUGGAGc -3' miRNA: 3'- gCCAGCUGUGGU--CUUCUacu-ACCUUc -5' |
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14493 | 5' | -50.3 | NC_003521.1 | + | 121025 | 0.7 | 0.980131 |
Target: 5'- cCGuGUCGccccgcugGCGCCGGAAGGUGGaccgcagccUGGAGGc -3' miRNA: 3'- -GC-CAGC--------UGUGGUCUUCUACU---------ACCUUC- -5' |
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14493 | 5' | -50.3 | NC_003521.1 | + | 7829 | 0.7 | 0.982217 |
Target: 5'- aGGccaucCGGCGCCAGAAGAcGA-GGggGu -3' miRNA: 3'- gCCa----GCUGUGGUCUUCUaCUaCCuuC- -5' |
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14493 | 5' | -50.3 | NC_003521.1 | + | 44985 | 0.7 | 0.984134 |
Target: 5'- ---cUGACGCCAGAGGcgGGgagGGAGGa -3' miRNA: 3'- gccaGCUGUGGUCUUCuaCUa--CCUUC- -5' |
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14493 | 5' | -50.3 | NC_003521.1 | + | 108280 | 0.7 | 0.984134 |
Target: 5'- aCGG-CGGCACCgaGGgcGGUGGUGGcGGu -3' miRNA: 3'- -GCCaGCUGUGG--UCuuCUACUACCuUC- -5' |
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14493 | 5' | -50.3 | NC_003521.1 | + | 156965 | 0.7 | 0.984134 |
Target: 5'- gGGUCGAgGaCGGAGGAggaggagucGAUGGAGGg -3' miRNA: 3'- gCCAGCUgUgGUCUUCUa--------CUACCUUC- -5' |
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14493 | 5' | -50.3 | NC_003521.1 | + | 212388 | 0.7 | 0.985891 |
Target: 5'- aGG-CGAgACCAcGGAGGUG-UGGAAGc -3' miRNA: 3'- gCCaGCUgUGGU-CUUCUACuACCUUC- -5' |
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14493 | 5' | -50.3 | NC_003521.1 | + | 148569 | 0.7 | 0.985891 |
Target: 5'- gCGGcagCGGCACCcaGGGAGGgucgacggGAUGGggGu -3' miRNA: 3'- -GCCa--GCUGUGG--UCUUCUa-------CUACCuuC- -5' |
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14493 | 5' | -50.3 | NC_003521.1 | + | 181862 | 0.69 | 0.988813 |
Target: 5'- aCGGcgCGcuucuucGCGCCAGAGGGccUGGUGGAGu -3' miRNA: 3'- -GCCa-GC-------UGUGGUCUUCU--ACUACCUUc -5' |
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14493 | 5' | -50.3 | NC_003521.1 | + | 148974 | 0.69 | 0.991472 |
Target: 5'- uGGUcCGcCGCCcuGGAGGGggGAUGGGAGa -3' miRNA: 3'- gCCA-GCuGUGG--UCUUCUa-CUACCUUC- -5' |
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14493 | 5' | -50.3 | NC_003521.1 | + | 228990 | 0.69 | 0.992548 |
Target: 5'- aGGUccCGAUACCAGccguGGAUGGucuguggcacaUGGAAGa -3' miRNA: 3'- gCCA--GCUGUGGUCu---UCUACU-----------ACCUUC- -5' |
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14493 | 5' | -50.3 | NC_003521.1 | + | 89701 | 0.79 | 0.692611 |
Target: 5'- aCGGagGACAgCAGAGGAgagcgGGUGGAAGa -3' miRNA: 3'- -GCCagCUGUgGUCUUCUa----CUACCUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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