miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14493 5' -50.3 NC_003521.1 + 136254 0.68 0.996423
Target:  5'- cCGGcCGcuACGCCgacgugauucAGGAGGUGGUGGAGc -3'
miRNA:   3'- -GCCaGC--UGUGG----------UCUUCUACUACCUUc -5'
14493 5' -50.3 NC_003521.1 + 200567 0.68 0.996423
Target:  5'- gCGGa--GCGCgAGAugcAGAUGAUGGAGGa -3'
miRNA:   3'- -GCCagcUGUGgUCU---UCUACUACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 77029 0.68 0.995823
Target:  5'- gCGGUUGAgGCCGGc-GGUGGUGGc-- -3'
miRNA:   3'- -GCCAGCUgUGGUCuuCUACUACCuuc -5'
14493 5' -50.3 NC_003521.1 + 155234 0.68 0.995143
Target:  5'- uCGGUgGAguCCGuGguGGUGGUGGggGg -3'
miRNA:   3'- -GCCAgCUguGGU-CuuCUACUACCuuC- -5'
14493 5' -50.3 NC_003521.1 + 174462 0.68 0.995143
Target:  5'- uGGgcgUGGCACUugaccuccucGGGAGAacacUGAUGGAAGg -3'
miRNA:   3'- gCCa--GCUGUGG----------UCUUCU----ACUACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 48704 0.69 0.993513
Target:  5'- aCGGagcCGACgagGCCGGGAGA-GGUGGAGa -3'
miRNA:   3'- -GCCa--GCUG---UGGUCUUCUaCUACCUUc -5'
14493 5' -50.3 NC_003521.1 + 6835 0.69 0.993513
Target:  5'- aGGagGGCGCCgAGGAGGUuguaGUGGGAGg -3'
miRNA:   3'- gCCagCUGUGG-UCUUCUAc---UACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 156112 0.69 0.993513
Target:  5'- aCGGgauccUGGCACCGGAGGccGGccUGGAGGu -3'
miRNA:   3'- -GCCa----GCUGUGGUCUUCuaCU--ACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 33952 0.69 0.993235
Target:  5'- uCGGUUGugAaaacuccguagaccCCAGggGAUGccgGGAAGu -3'
miRNA:   3'- -GCCAGCugU--------------GGUCuuCUACua-CCUUC- -5'
14493 5' -50.3 NC_003521.1 + 228990 0.69 0.992548
Target:  5'- aGGUccCGAUACCAGccguGGAUGGucuguggcacaUGGAAGa -3'
miRNA:   3'- gCCA--GCUGUGGUCu---UCUACU-----------ACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 97543 0.69 0.991472
Target:  5'- aCGGcgCGAgaacgagaaGCCAGcccAGAUGAUGGAGGa -3'
miRNA:   3'- -GCCa-GCUg--------UGGUCu--UCUACUACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 148974 0.69 0.991472
Target:  5'- uGGUcCGcCGCCcuGGAGGGggGAUGGGAGa -3'
miRNA:   3'- gCCA-GCuGUGG--UCUUCUa-CUACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 170176 0.69 0.990276
Target:  5'- uGGUCGACuuCGGAGcGGUGGugccggUGGAGGu -3'
miRNA:   3'- gCCAGCUGugGUCUU-CUACU------ACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 181862 0.69 0.988813
Target:  5'- aCGGcgCGcuucuucGCGCCAGAGGGccUGGUGGAGu -3'
miRNA:   3'- -GCCa-GC-------UGUGGUCUUCU--ACUACCUUc -5'
14493 5' -50.3 NC_003521.1 + 212388 0.7 0.985891
Target:  5'- aGG-CGAgACCAcGGAGGUG-UGGAAGc -3'
miRNA:   3'- gCCaGCUgUGGU-CUUCUACuACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 148569 0.7 0.985891
Target:  5'- gCGGcagCGGCACCcaGGGAGGgucgacggGAUGGggGu -3'
miRNA:   3'- -GCCa--GCUGUGG--UCUUCUa-------CUACCuuC- -5'
14493 5' -50.3 NC_003521.1 + 156965 0.7 0.984134
Target:  5'- gGGUCGAgGaCGGAGGAggaggagucGAUGGAGGg -3'
miRNA:   3'- gCCAGCUgUgGUCUUCUa--------CUACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 108280 0.7 0.984134
Target:  5'- aCGG-CGGCACCgaGGgcGGUGGUGGcGGu -3'
miRNA:   3'- -GCCaGCUGUGG--UCuuCUACUACCuUC- -5'
14493 5' -50.3 NC_003521.1 + 44985 0.7 0.984134
Target:  5'- ---cUGACGCCAGAGGcgGGgagGGAGGa -3'
miRNA:   3'- gccaGCUGUGGUCUUCuaCUa--CCUUC- -5'
14493 5' -50.3 NC_003521.1 + 7829 0.7 0.982217
Target:  5'- aGGccaucCGGCGCCAGAAGAcGA-GGggGu -3'
miRNA:   3'- gCCa----GCUGUGGUCUUCUaCUaCCuuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.