miRNA display CGI


Results 21 - 40 of 426 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14494 3' -56.6 NC_003521.1 + 140628 0.66 0.934596
Target:  5'- -cUGCAGCGguacACGGCCGagagCCUgCGCCugGCg -3'
miRNA:   3'- caAUGUCGU----UGUCGGCg---GGA-GCGG--UG- -5'
14494 3' -56.6 NC_003521.1 + 103524 0.66 0.934596
Target:  5'- --cGC-GCAGCAGCCGCgCCaC-CCGCa -3'
miRNA:   3'- caaUGuCGUUGUCGGCG-GGaGcGGUG- -5'
14494 3' -56.6 NC_003521.1 + 149124 0.66 0.934596
Target:  5'- --aGCGGCAcgcagaccGCAGCaCGCCCaggagccCGCUGCg -3'
miRNA:   3'- caaUGUCGU--------UGUCG-GCGGGa------GCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 3665 0.66 0.934596
Target:  5'- -cUGCcuCGGCGGCCGggaCCCUCGUCGg -3'
miRNA:   3'- caAUGucGUUGUCGGC---GGGAGCGGUg -5'
14494 3' -56.6 NC_003521.1 + 31096 0.66 0.934596
Target:  5'- --gACGGCGGCGGCCGgUacaCGCgGCg -3'
miRNA:   3'- caaUGUCGUUGUCGGCgGga-GCGgUG- -5'
14494 3' -56.6 NC_003521.1 + 120587 0.66 0.934596
Target:  5'- --cACGGC-GCGGCCGCCggCUCcuGCCGg -3'
miRNA:   3'- caaUGUCGuUGUCGGCGG--GAG--CGGUg -5'
14494 3' -56.6 NC_003521.1 + 44005 0.66 0.934596
Target:  5'- --gGCcuGCucaaccACGGCCuGCCCUCGCCcACc -3'
miRNA:   3'- caaUGu-CGu-----UGUCGG-CGGGAGCGG-UG- -5'
14494 3' -56.6 NC_003521.1 + 41963 0.66 0.934596
Target:  5'- ---cCGGgGGCAGCUGUUCgacCGCCGCg -3'
miRNA:   3'- caauGUCgUUGUCGGCGGGa--GCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 183882 0.66 0.934596
Target:  5'- cGUUACucGGCAuCAGCUGCaga-GCCACg -3'
miRNA:   3'- -CAAUG--UCGUuGUCGGCGggagCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 143827 0.66 0.934107
Target:  5'- ---cCAGCGagaucguGCGcGCCGCCCUCuGCgACu -3'
miRNA:   3'- caauGUCGU-------UGU-CGGCGGGAG-CGgUG- -5'
14494 3' -56.6 NC_003521.1 + 139764 0.66 0.933124
Target:  5'- --gACGGCAggauccggccgucgGCGGCCGCCauggaGCUGCa -3'
miRNA:   3'- caaUGUCGU--------------UGUCGGCGGgag--CGGUG- -5'
14494 3' -56.6 NC_003521.1 + 31330 0.66 0.933124
Target:  5'- --cGCAGCAucGCGGCCucGCCUUUaaacagccugaugaGCCGCu -3'
miRNA:   3'- caaUGUCGU--UGUCGG--CGGGAG--------------CGGUG- -5'
14494 3' -56.6 NC_003521.1 + 226959 0.66 0.932628
Target:  5'- --cAUGGCGGC-GCCGCCCgcagagacccccgCGCCGa -3'
miRNA:   3'- caaUGUCGUUGuCGGCGGGa------------GCGGUg -5'
14494 3' -56.6 NC_003521.1 + 180109 0.66 0.932628
Target:  5'- --gGCAGCGGCGuggugcgacccgcGCCGCCCcCgggucccccgcgcgGCCGCa -3'
miRNA:   3'- caaUGUCGUUGU-------------CGGCGGGaG--------------CGGUG- -5'
14494 3' -56.6 NC_003521.1 + 20483 0.66 0.929608
Target:  5'- -cUACAG-AACGGCCuCCagaugCGCCACg -3'
miRNA:   3'- caAUGUCgUUGUCGGcGGga---GCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 120035 0.66 0.929608
Target:  5'- --aGCAGCAACccGGCCGUguucaCCUgGCCcCa -3'
miRNA:   3'- caaUGUCGUUG--UCGGCG-----GGAgCGGuG- -5'
14494 3' -56.6 NC_003521.1 + 222006 0.66 0.929608
Target:  5'- -gUGCGGCGugGGCgggaaGCaCUUgGCCACg -3'
miRNA:   3'- caAUGUCGUugUCGg----CG-GGAgCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 126072 0.66 0.929608
Target:  5'- ---cCAGCAGCuGUgGCCg-CGCCACc -3'
miRNA:   3'- caauGUCGUUGuCGgCGGgaGCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 183657 0.66 0.929608
Target:  5'- -gUGCuGCGGCAcGCCGacgaCCU-GCCGCg -3'
miRNA:   3'- caAUGuCGUUGU-CGGCg---GGAgCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 142879 0.66 0.929608
Target:  5'- --cGCAGCAGCGGCgauCCCUuggagagcggCGCCAUc -3'
miRNA:   3'- caaUGUCGUUGUCGgc-GGGA----------GCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.