miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14494 5' -55 NC_003521.1 + 167039 0.66 0.963697
Target:  5'- uCAGcucgGGCAGCGGcguggcgcucaugacGCCGGUGCCGgcCCAc -3'
miRNA:   3'- -GUCa---CCGUCGUCa--------------UGGUCAUGGU--GGU- -5'
14494 5' -55 NC_003521.1 + 178867 0.66 0.963364
Target:  5'- uCAGcgGGCAGUAGaGCgAG-GCCGCCu -3'
miRNA:   3'- -GUCa-CCGUCGUCaUGgUCaUGGUGGu -5'
14494 5' -55 NC_003521.1 + 31706 0.66 0.963029
Target:  5'- gCGGcGGCAGCAugugcgcGUGCUGGgacgccgcgGCCACCGc -3'
miRNA:   3'- -GUCaCCGUCGU-------CAUGGUCa--------UGGUGGU- -5'
14494 5' -55 NC_003521.1 + 22474 0.66 0.963029
Target:  5'- aCGGUGGCcuGCcuGGUgaugaacACCGGcACCACCGu -3'
miRNA:   3'- -GUCACCGu-CG--UCA-------UGGUCaUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 127327 0.66 0.959919
Target:  5'- --uUGGuCAGCGGcUGCCGGUcgGCCACg- -3'
miRNA:   3'- gucACC-GUCGUC-AUGGUCA--UGGUGgu -5'
14494 5' -55 NC_003521.1 + 93209 0.66 0.959919
Target:  5'- -cGUGaaGguGCAGUuCgGGUACCACCu -3'
miRNA:   3'- guCAC--CguCGUCAuGgUCAUGGUGGu -5'
14494 5' -55 NC_003521.1 + 238293 0.66 0.959919
Target:  5'- --uUGGCGGCgAGgGCCAGUACC-UCGg -3'
miRNA:   3'- gucACCGUCG-UCaUGGUCAUGGuGGU- -5'
14494 5' -55 NC_003521.1 + 209100 0.66 0.959563
Target:  5'- gCGGUGGCcGCGGcgucCCAGcacgcgcacaugcUGCCGCCGc -3'
miRNA:   3'- -GUCACCGuCGUCau--GGUC-------------AUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 230481 0.66 0.957748
Target:  5'- -uGUGG-AGCAGUACCucuagguuuuuaggaGGUGCUAUCGa -3'
miRNA:   3'- guCACCgUCGUCAUGG---------------UCAUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 106121 0.66 0.956257
Target:  5'- -cGUGGCGGCcGUgggcACCuaccGCCACCAg -3'
miRNA:   3'- guCACCGUCGuCA----UGGuca-UGGUGGU- -5'
14494 5' -55 NC_003521.1 + 7755 0.66 0.956257
Target:  5'- aGGcGGCGGCAGUcCCAGcagaCGCCGc -3'
miRNA:   3'- gUCaCCGUCGUCAuGGUCaug-GUGGU- -5'
14494 5' -55 NC_003521.1 + 76719 0.66 0.956257
Target:  5'- cCGGcGGCGGCAGUaaagacuaaggaAUgAGUccuGCCACCGa -3'
miRNA:   3'- -GUCaCCGUCGUCA------------UGgUCA---UGGUGGU- -5'
14494 5' -55 NC_003521.1 + 88069 0.66 0.956257
Target:  5'- gCGGUGGuCGGCGGcGCCcGUgACCACgGg -3'
miRNA:   3'- -GUCACC-GUCGUCaUGGuCA-UGGUGgU- -5'
14494 5' -55 NC_003521.1 + 129207 0.66 0.955879
Target:  5'- uGGUGGUcuggcgcguggugGGCAGU-CCGGcGCCGCUg -3'
miRNA:   3'- gUCACCG-------------UCGUCAuGGUCaUGGUGGu -5'
14494 5' -55 NC_003521.1 + 91858 0.66 0.955115
Target:  5'- cCAG-GGCGGCGG-ACCaggacggcggcggcGGUGCgACCAc -3'
miRNA:   3'- -GUCaCCGUCGUCaUGG--------------UCAUGgUGGU- -5'
14494 5' -55 NC_003521.1 + 122089 0.67 0.952374
Target:  5'- cCAGcaaccuGCAGCccGUGCCGGUGCCGCg- -3'
miRNA:   3'- -GUCac----CGUCGu-CAUGGUCAUGGUGgu -5'
14494 5' -55 NC_003521.1 + 183918 0.67 0.952374
Target:  5'- ---cGGC-GCuGUACCGGUGCaaCACCAg -3'
miRNA:   3'- gucaCCGuCGuCAUGGUCAUG--GUGGU- -5'
14494 5' -55 NC_003521.1 + 198791 0.67 0.952374
Target:  5'- gGGUaGCAGCugcguGGUGCCGgcggcgucugucGUGCCGCCGu -3'
miRNA:   3'- gUCAcCGUCG-----UCAUGGU------------CAUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 196738 0.67 0.952374
Target:  5'- uGGUGGCGGCGGcGCCuGcACCGuCUg -3'
miRNA:   3'- gUCACCGUCGUCaUGGuCaUGGU-GGu -5'
14494 5' -55 NC_003521.1 + 130133 0.67 0.952374
Target:  5'- -cGUcGGCGGCGccGCCGcUGCCGCCAc -3'
miRNA:   3'- guCA-CCGUCGUcaUGGUcAUGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.