miRNA display CGI


Results 21 - 40 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14499 3' -51.1 NC_003521.1 + 44139 0.67 0.996567
Target:  5'- uGCUccUCcuCCGacgcCGUCGUCgAGCAGCAg- -3'
miRNA:   3'- -CGA--AGuuGGU----GCAGCAG-UCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 14927 0.67 0.996567
Target:  5'- cGCUUCGAgCGCGag--CGGCAGCGc- -3'
miRNA:   3'- -CGAAGUUgGUGCagcaGUCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 198210 0.67 0.996567
Target:  5'- gGCggCGACgGCGcCGcCGGCGGcCGUGg -3'
miRNA:   3'- -CGaaGUUGgUGCaGCaGUCGUC-GUAC- -5'
14499 3' -51.1 NC_003521.1 + 198111 0.67 0.996567
Target:  5'- cGCUUuggaaaucgugcCGGCCACGUUGUCgcgcaucucGGCGGCu-- -3'
miRNA:   3'- -CGAA------------GUUGGUGCAGCAG---------UCGUCGuac -5'
14499 3' -51.1 NC_003521.1 + 15695 0.67 0.996567
Target:  5'- ---gCAACCACGUCGacCAGguGCu-- -3'
miRNA:   3'- cgaaGUUGGUGCAGCa-GUCguCGuac -5'
14499 3' -51.1 NC_003521.1 + 16582 0.67 0.996567
Target:  5'- aUUUCA-CCAUGuUCGaCAGCGGUGUGg -3'
miRNA:   3'- cGAAGUuGGUGC-AGCaGUCGUCGUAC- -5'
14499 3' -51.1 NC_003521.1 + 178519 0.67 0.996167
Target:  5'- aGCUUCAugaugcacaucucguACCGCGUgcCGUCGuugaugacgaaacGCAGCAg- -3'
miRNA:   3'- -CGAAGU---------------UGGUGCA--GCAGU-------------CGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 192311 0.67 0.995984
Target:  5'- cGCggUAGCgGCGUCGgCGGCAcCGUGg -3'
miRNA:   3'- -CGaaGUUGgUGCAGCaGUCGUcGUAC- -5'
14499 3' -51.1 NC_003521.1 + 153158 0.67 0.995984
Target:  5'- cGCUcagCAACCACaUCGUgGGCuGCGc- -3'
miRNA:   3'- -CGAa--GUUGGUGcAGCAgUCGuCGUac -5'
14499 3' -51.1 NC_003521.1 + 149967 0.67 0.995984
Target:  5'- --cUCGGCC--GUgGUCAGCAGCAg- -3'
miRNA:   3'- cgaAGUUGGugCAgCAGUCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 194003 0.67 0.995984
Target:  5'- cCUUCAGCguCGUCaccggCGGCGGCGUc -3'
miRNA:   3'- cGAAGUUGguGCAGca---GUCGUCGUAc -5'
14499 3' -51.1 NC_003521.1 + 83205 0.67 0.995984
Target:  5'- ----aGACCaACGUCGaaaCAGCAGCGUa -3'
miRNA:   3'- cgaagUUGG-UGCAGCa--GUCGUCGUAc -5'
14499 3' -51.1 NC_003521.1 + 204632 0.67 0.995984
Target:  5'- cGUUUgAGCCGC-UCGgcCAGguGCGUGg -3'
miRNA:   3'- -CGAAgUUGGUGcAGCa-GUCguCGUAC- -5'
14499 3' -51.1 NC_003521.1 + 165972 0.67 0.995984
Target:  5'- --gUCGugCAgGUCGU--GCAGCGUGa -3'
miRNA:   3'- cgaAGUugGUgCAGCAguCGUCGUAC- -5'
14499 3' -51.1 NC_003521.1 + 116750 0.67 0.995322
Target:  5'- cCUUCAAaCACGUgGcuUguGCAGCGUGg -3'
miRNA:   3'- cGAAGUUgGUGCAgC--AguCGUCGUAC- -5'
14499 3' -51.1 NC_003521.1 + 174020 0.67 0.995322
Target:  5'- cGCUUCAGCCGguccUG-CGUCAcCAGCGa- -3'
miRNA:   3'- -CGAAGUUGGU----GCaGCAGUcGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 204575 0.67 0.994575
Target:  5'- --aUCcACCACGUCGcgccCGGCAGUcgGu -3'
miRNA:   3'- cgaAGuUGGUGCAGCa---GUCGUCGuaC- -5'
14499 3' -51.1 NC_003521.1 + 95811 0.67 0.994575
Target:  5'- aGCgcgUCGGCgAUGUCGgcgcgcgaggccUCGGUGGCAUGc -3'
miRNA:   3'- -CGa--AGUUGgUGCAGC------------AGUCGUCGUAC- -5'
14499 3' -51.1 NC_003521.1 + 196921 0.67 0.994575
Target:  5'- --gUUGAgCGCGUCGUCcaccGGCAGCAc- -3'
miRNA:   3'- cgaAGUUgGUGCAGCAG----UCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 169310 0.67 0.994575
Target:  5'- --gUCGGCCgGCGUCGgucgCAGCgucgcggccGGCGUGg -3'
miRNA:   3'- cgaAGUUGG-UGCAGCa---GUCG---------UCGUAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.