miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14499 5' -54 NC_003521.1 + 44262 0.66 0.984124
Target:  5'- cGGCGUCaCGCCGGaggagaucagcguGCACC-UGggcgccgACGAc -3'
miRNA:   3'- -CCGUAGaGCGGCC-------------UGUGGuACa------UGCU- -5'
14499 5' -54 NC_003521.1 + 88828 0.67 0.980448
Target:  5'- uGCAcuUCUCGCUGuGCACCAUccucucGUGCGu -3'
miRNA:   3'- cCGU--AGAGCGGCcUGUGGUA------CAUGCu -5'
14499 5' -54 NC_003521.1 + 160170 0.67 0.980448
Target:  5'- --gAUCUCGa-GGACAUCAUGcGCGAg -3'
miRNA:   3'- ccgUAGAGCggCCUGUGGUACaUGCU- -5'
14499 5' -54 NC_003521.1 + 74582 0.67 0.980448
Target:  5'- cGGCccgCUCGCCGGGCGgCAUc-ACGc -3'
miRNA:   3'- -CCGua-GAGCGGCCUGUgGUAcaUGCu -5'
14499 5' -54 NC_003521.1 + 112184 0.67 0.980448
Target:  5'- cGGUGUCggCGCCGGcCACC---UACGGc -3'
miRNA:   3'- -CCGUAGa-GCGGCCuGUGGuacAUGCU- -5'
14499 5' -54 NC_003521.1 + 188025 0.67 0.980448
Target:  5'- cGCAgg-CGUCGGACAUCAgccgGUGCa- -3'
miRNA:   3'- cCGUagaGCGGCCUGUGGUa---CAUGcu -5'
14499 5' -54 NC_003521.1 + 197920 0.67 0.980448
Target:  5'- uGG-AUCUCGCUGGGCuCCAgaucgACGGg -3'
miRNA:   3'- -CCgUAGAGCGGCCUGuGGUaca--UGCU- -5'
14499 5' -54 NC_003521.1 + 95192 0.67 0.980448
Target:  5'- cGGCGcggaacUCcaCGCCcGGCACCggGUGCGAc -3'
miRNA:   3'- -CCGU------AGa-GCGGcCUGUGGuaCAUGCU- -5'
14499 5' -54 NC_003521.1 + 125105 0.67 0.978276
Target:  5'- cGGCAacauccucuUCUCcCUGGGCACgcUGUACGGa -3'
miRNA:   3'- -CCGU---------AGAGcGGCCUGUGguACAUGCU- -5'
14499 5' -54 NC_003521.1 + 129175 0.67 0.978276
Target:  5'- gGGCGacuUCUCGCUguauuuGGugACCAUG-AUGGu -3'
miRNA:   3'- -CCGU---AGAGCGG------CCugUGGUACaUGCU- -5'
14499 5' -54 NC_003521.1 + 77264 0.67 0.978276
Target:  5'- gGGUAcUCgcCGCCGGGCACCAgcaggGUG-GAg -3'
miRNA:   3'- -CCGU-AGa-GCGGCCUGUGGUa----CAUgCU- -5'
14499 5' -54 NC_003521.1 + 186606 0.67 0.978276
Target:  5'- cGGCAgUCgguacUGCCGGACACCGgccagcaGCGGu -3'
miRNA:   3'- -CCGU-AGa----GCGGCCUGUGGUaca----UGCU- -5'
14499 5' -54 NC_003521.1 + 140258 0.67 0.978276
Target:  5'- cGGCGguaaGUCGGACGCCGaGgGCGAg -3'
miRNA:   3'- -CCGUagagCGGCCUGUGGUaCaUGCU- -5'
14499 5' -54 NC_003521.1 + 53858 0.67 0.97593
Target:  5'- cGGCGUcCUCgGCCGG----CGUGUACGAg -3'
miRNA:   3'- -CCGUA-GAG-CGGCCugugGUACAUGCU- -5'
14499 5' -54 NC_003521.1 + 101928 0.67 0.97593
Target:  5'- cGGCGUaCUCGCCGGugGgguCCAcGUGg-- -3'
miRNA:   3'- -CCGUA-GAGCGGCCugU---GGUaCAUgcu -5'
14499 5' -54 NC_003521.1 + 59549 0.67 0.973404
Target:  5'- cGGCugca-GCUGGACGCCGUGauCGAa -3'
miRNA:   3'- -CCGuagagCGGCCUGUGGUACauGCU- -5'
14499 5' -54 NC_003521.1 + 149485 0.67 0.973404
Target:  5'- cGGC--UUCGCCGGACagacGCCGcUGcGCGAc -3'
miRNA:   3'- -CCGuaGAGCGGCCUG----UGGU-ACaUGCU- -5'
14499 5' -54 NC_003521.1 + 171664 0.67 0.970691
Target:  5'- gGGCGUCgggagCGUCGG-CGgCAUG-ACGAg -3'
miRNA:   3'- -CCGUAGa----GCGGCCuGUgGUACaUGCU- -5'
14499 5' -54 NC_003521.1 + 2698 0.67 0.970691
Target:  5'- -uCAUCUCcCCGGaACGCCAcucGUGCGGg -3'
miRNA:   3'- ccGUAGAGcGGCC-UGUGGUa--CAUGCU- -5'
14499 5' -54 NC_003521.1 + 89863 0.67 0.970691
Target:  5'- uGGCAUgUCGCCcauacGACGCCAccugGCGGu -3'
miRNA:   3'- -CCGUAgAGCGGc----CUGUGGUaca-UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.