Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
145 | 5' | -56 | AC_000006.1 | + | 14255 | 0.67 | 0.48608 |
Target: 5'- cCGCAGcCCGgcagcagcaccacguCCGGGUgaaaggCCUCGUAGGu -3' miRNA: 3'- aGCGUCaGGC---------------GGUUCGa-----GGAGCAUCU- -5' |
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145 | 5' | -56 | AC_000006.1 | + | 7132 | 0.68 | 0.4113 |
Target: 5'- gUCGCAG-CCGCCGuGCUCC-CaUAGc -3' miRNA: 3'- -AGCGUCaGGCGGUuCGAGGaGcAUCu -5' |
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145 | 5' | -56 | AC_000006.1 | + | 11586 | 0.68 | 0.430817 |
Target: 5'- cUCGCGGUCgcucagcucgCGCCGccGGCUcgcgcucacggCCUUGUGGAu -3' miRNA: 3'- -AGCGUCAG----------GCGGU--UCGA-----------GGAGCAUCU- -5' |
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145 | 5' | -56 | AC_000006.1 | + | 5577 | 0.69 | 0.383077 |
Target: 5'- cUGCAGgggcgucCCGCgGucCUCCUCGUAGAg -3' miRNA: 3'- aGCGUCa------GGCGgUucGAGGAGCAUCU- -5' |
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145 | 5' | -56 | AC_000006.1 | + | 30329 | 0.72 | 0.229445 |
Target: 5'- -aGCAGgagcgugCCGCCAaggAGCUCCUCGa--- -3' miRNA: 3'- agCGUCa------GGCGGU---UCGAGGAGCaucu -5' |
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145 | 5' | -56 | AC_000006.1 | + | 7359 | 0.72 | 0.233815 |
Target: 5'- aUCGCGGgcggCCuuugaugugcggcaGCUuuuuGAGCUCCUCGUAGGu -3' miRNA: 3'- -AGCGUCa---GG--------------CGG----UUCGAGGAGCAUCU- -5' |
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145 | 5' | -56 | AC_000006.1 | + | 6437 | 0.75 | 0.155696 |
Target: 5'- cUCGCGGgCgGCCAuuGCUCgCUCGUAGGg -3' miRNA: 3'- -AGCGUCaGgCGGUu-CGAG-GAGCAUCU- -5' |
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145 | 5' | -56 | AC_000006.1 | + | 24907 | 1.09 | 0.000453 |
Target: 5'- cUCGCAGUCCGCCAAGCUCCUCGUAGAu -3' miRNA: 3'- -AGCGUCAGGCGGUUCGAGGAGCAUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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