miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
145 5' -56 AC_000006.1 + 14255 0.67 0.48608
Target:  5'- cCGCAGcCCGgcagcagcaccacguCCGGGUgaaaggCCUCGUAGGu -3'
miRNA:   3'- aGCGUCaGGC---------------GGUUCGa-----GGAGCAUCU- -5'
145 5' -56 AC_000006.1 + 7132 0.68 0.4113
Target:  5'- gUCGCAG-CCGCCGuGCUCC-CaUAGc -3'
miRNA:   3'- -AGCGUCaGGCGGUuCGAGGaGcAUCu -5'
145 5' -56 AC_000006.1 + 11586 0.68 0.430817
Target:  5'- cUCGCGGUCgcucagcucgCGCCGccGGCUcgcgcucacggCCUUGUGGAu -3'
miRNA:   3'- -AGCGUCAG----------GCGGU--UCGA-----------GGAGCAUCU- -5'
145 5' -56 AC_000006.1 + 5577 0.69 0.383077
Target:  5'- cUGCAGgggcgucCCGCgGucCUCCUCGUAGAg -3'
miRNA:   3'- aGCGUCa------GGCGgUucGAGGAGCAUCU- -5'
145 5' -56 AC_000006.1 + 30329 0.72 0.229445
Target:  5'- -aGCAGgagcgugCCGCCAaggAGCUCCUCGa--- -3'
miRNA:   3'- agCGUCa------GGCGGU---UCGAGGAGCaucu -5'
145 5' -56 AC_000006.1 + 7359 0.72 0.233815
Target:  5'- aUCGCGGgcggCCuuugaugugcggcaGCUuuuuGAGCUCCUCGUAGGu -3'
miRNA:   3'- -AGCGUCa---GG--------------CGG----UUCGAGGAGCAUCU- -5'
145 5' -56 AC_000006.1 + 6437 0.75 0.155696
Target:  5'- cUCGCGGgCgGCCAuuGCUCgCUCGUAGGg -3'
miRNA:   3'- -AGCGUCaGgCGGUu-CGAG-GAGCAUCU- -5'
145 5' -56 AC_000006.1 + 24907 1.09 0.000453
Target:  5'- cUCGCAGUCCGCCAAGCUCCUCGUAGAu -3'
miRNA:   3'- -AGCGUCAGGCGGUUCGAGGAGCAUCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.