miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1450 3' -59.1 NC_001335.1 + 1775 0.66 0.50335
Target:  5'- ---aCAUGCCGAGGcCGGCUgUCGGAg -3'
miRNA:   3'- uuacGUGCGGCUCUaGCUGGgGGCCU- -5'
1450 3' -59.1 NC_001335.1 + 19850 0.66 0.50335
Target:  5'- uGUGgACGCUGccuGAU-GACCCCaCGGAc -3'
miRNA:   3'- uUACgUGCGGCu--CUAgCUGGGG-GCCU- -5'
1450 3' -59.1 NC_001335.1 + 34266 0.66 0.473133
Target:  5'- cGAUGC-CGUCGAGcgUGAUCCCUGc- -3'
miRNA:   3'- -UUACGuGCGGCUCuaGCUGGGGGCcu -5'
1450 3' -59.1 NC_001335.1 + 47724 0.66 0.472141
Target:  5'- -cUGCccacuACGCCGAGAccgaggcUCGGCUCCagaGGGa -3'
miRNA:   3'- uuACG-----UGCGGCUCU-------AGCUGGGGg--CCU- -5'
1450 3' -59.1 NC_001335.1 + 16119 0.67 0.434325
Target:  5'- -cUGC-CGCCGAGGa-GACCUCCGaGGa -3'
miRNA:   3'- uuACGuGCGGCUCUagCUGGGGGC-CU- -5'
1450 3' -59.1 NC_001335.1 + 46668 0.67 0.433378
Target:  5'- --gGCACGCCGuagacguAGAUCcgcuGACCgCCCGuGAg -3'
miRNA:   3'- uuaCGUGCGGC-------UCUAG----CUGG-GGGC-CU- -5'
1450 3' -59.1 NC_001335.1 + 9179 0.67 0.423979
Target:  5'- gGAUGCGCGCCGccgcgucGGucAUCGACCgaagCUCGGGc -3'
miRNA:   3'- -UUACGUGCGGC-------UC--UAGCUGG----GGGCCU- -5'
1450 3' -59.1 NC_001335.1 + 10411 0.69 0.329959
Target:  5'- cGAUG-ACGagaCCGuGAUCGACCUCUGGAa -3'
miRNA:   3'- -UUACgUGC---GGCuCUAGCUGGGGGCCU- -5'
1450 3' -59.1 NC_001335.1 + 1124 0.69 0.329959
Target:  5'- --aGCACGCaaccgcaGAGG-CGcuggaGCCCCCGGAu -3'
miRNA:   3'- uuaCGUGCGg------CUCUaGC-----UGGGGGCCU- -5'
1450 3' -59.1 NC_001335.1 + 45347 0.69 0.322143
Target:  5'- -cUGUACGUCGAcAUCGACCUCgaGGAg -3'
miRNA:   3'- uuACGUGCGGCUcUAGCUGGGGg-CCU- -5'
1450 3' -59.1 NC_001335.1 + 41690 0.71 0.251594
Target:  5'- aGAUcCACGUgGGGAUCGACgCCUGGGg -3'
miRNA:   3'- -UUAcGUGCGgCUCUAGCUGgGGGCCU- -5'
1450 3' -59.1 NC_001335.1 + 8841 1.06 0.000623
Target:  5'- gAAUGCACGCCGAGAUCGACCCCCGGAu -3'
miRNA:   3'- -UUACGUGCGGCUCUAGCUGGGGGCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.