miRNA display CGI


Results 61 - 80 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 105578 0.66 0.808831
Target:  5'- -cCGCCGcCGuGUCGUCGCCGcCGccGGCg -3'
miRNA:   3'- acGCGGC-GC-CGGCAGUGGCuGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 48647 0.66 0.792174
Target:  5'- -cCGgUGUGGCCGcgACCGGCGcUGACa -3'
miRNA:   3'- acGCgGCGCCGGCagUGGCUGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 75179 0.66 0.799734
Target:  5'- aGCGCgGCGugcuGCUGcucaacaccguguUCACCGugGUGcACg -3'
miRNA:   3'- aCGCGgCGC----CGGC-------------AGUGGCugCAC-UG- -5'
14503 5' -61.6 NC_003521.1 + 37007 0.66 0.775016
Target:  5'- gGCGUCGCGGCggaGUCaggACCGACa---- -3'
miRNA:   3'- aCGCGGCGCCGg--CAG---UGGCUGcacug -5'
14503 5' -61.6 NC_003521.1 + 98148 0.66 0.775016
Target:  5'- aGCuGCUGCcGCCGUCGCUG-C-UGACg -3'
miRNA:   3'- aCG-CGGCGcCGGCAGUGGCuGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 29900 0.66 0.778485
Target:  5'- gGCGacgacgaccgacgacCCGUGGCCGUCAagGGCcUGGCa -3'
miRNA:   3'- aCGC---------------GGCGCCGGCAGUggCUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 13917 0.66 0.783654
Target:  5'- gGgGCCGCggaGGCCGcgcuggcCGCCGugGUGcCc -3'
miRNA:   3'- aCgCGGCG---CCGGCa------GUGGCugCACuG- -5'
14503 5' -61.6 NC_003521.1 + 123965 0.66 0.775016
Target:  5'- cUGCGCgCGCaGGUCGUCGCgGuCGgcGGCc -3'
miRNA:   3'- -ACGCG-GCG-CCGGCAGUGgCuGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 107623 0.66 0.808831
Target:  5'- cGCGCCccgaccGCGGUCGUC-CCGAuCGccgaGGCc -3'
miRNA:   3'- aCGCGG------CGCCGGCAGuGGCU-GCa---CUG- -5'
14503 5' -61.6 NC_003521.1 + 17800 0.66 0.766268
Target:  5'- gGCG-UGCuGGCCGUgCgACCGGCG-GACg -3'
miRNA:   3'- aCGCgGCG-CCGGCA-G-UGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 6050 0.66 0.808831
Target:  5'- cGUGCCccaGCGGCCc-CGCagGGCGUGAUc -3'
miRNA:   3'- aCGCGG---CGCCGGcaGUGg-CUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 105935 0.66 0.808831
Target:  5'- cUGCG-UGUGGCCGgCGCgGAUGaUGACc -3'
miRNA:   3'- -ACGCgGCGCCGGCaGUGgCUGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 196547 0.66 0.800568
Target:  5'- gGCGCCcagGUGcacGCUGaUCuccuCCGGCGUGACg -3'
miRNA:   3'- aCGCGG---CGC---CGGC-AGu---GGCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 58402 0.66 0.800568
Target:  5'- -cUGCCGCGGCCG-CGugaugCGGCGguUGACg -3'
miRNA:   3'- acGCGGCGCCGGCaGUg----GCUGC--ACUG- -5'
14503 5' -61.6 NC_003521.1 + 212503 0.66 0.808831
Target:  5'- gGCGguCCGCaGGCCG-CGCCGGgGUcGCu -3'
miRNA:   3'- aCGC--GGCG-CCGGCaGUGGCUgCAcUG- -5'
14503 5' -61.6 NC_003521.1 + 141292 0.66 0.808831
Target:  5'- -cCGCUGCGGCacgGUCuCCGACcUGAUc -3'
miRNA:   3'- acGCGGCGCCGg--CAGuGGCUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 17754 0.67 0.711865
Target:  5'- --gGCCGgggaacUGGCCGUacCGCCGGCGgcgGACg -3'
miRNA:   3'- acgCGGC------GCCGGCA--GUGGCUGCa--CUG- -5'
14503 5' -61.6 NC_003521.1 + 26499 0.67 0.745766
Target:  5'- gGCGCgaUGCGcucuucaccaccacGCUGcUCACCGugGUGAUg -3'
miRNA:   3'- aCGCG--GCGC--------------CGGC-AGUGGCugCACUG- -5'
14503 5' -61.6 NC_003521.1 + 89305 0.67 0.711865
Target:  5'- cGCGCCGCcucuGGCCGacggcgguaguUCACCGucCGcGAUg -3'
miRNA:   3'- aCGCGGCG----CCGGC-----------AGUGGCu-GCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 197341 0.67 0.739431
Target:  5'- gGcCGCCGCGGCCagcacgGcCGCCG-CGcUGGCc -3'
miRNA:   3'- aC-GCGGCGCCGG------CaGUGGCuGC-ACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.