miRNA display CGI


Results 81 - 100 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 190356 0.67 0.711865
Target:  5'- cGCGCCG-GGCagcaucucCGUCuccuCCGACGUcGAUa -3'
miRNA:   3'- aCGCGGCgCCG--------GCAGu---GGCUGCA-CUG- -5'
14503 5' -61.6 NC_003521.1 + 123606 0.67 0.711865
Target:  5'- uUGCGUCGCaggggcagccGCCGUagCAgCGGCGUGAUg -3'
miRNA:   3'- -ACGCGGCGc---------CGGCA--GUgGCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 166252 0.67 0.757415
Target:  5'- cGCGCCGCcgcuCCGUCGCCGcCcucaGACa -3'
miRNA:   3'- aCGCGGCGcc--GGCAGUGGCuGca--CUG- -5'
14503 5' -61.6 NC_003521.1 + 184848 0.67 0.757415
Target:  5'- --gGCUGCGGCCccugcaCAUCGGCGUGGu -3'
miRNA:   3'- acgCGGCGCCGGca----GUGGCUGCACUg -5'
14503 5' -61.6 NC_003521.1 + 176070 0.67 0.748468
Target:  5'- gGUGCCGC-GCCG--GCCGGCGUcuuGGCc -3'
miRNA:   3'- aCGCGGCGcCGGCagUGGCUGCA---CUG- -5'
14503 5' -61.6 NC_003521.1 + 21286 0.67 0.748468
Target:  5'- aGCGCuuCGCGGUCuggCugCG-CGUGGCg -3'
miRNA:   3'- aCGCG--GCGCCGGca-GugGCuGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 139426 0.67 0.747568
Target:  5'- cGgGCucuccugCGUGGCCGUCAagCGGCGcGACg -3'
miRNA:   3'- aCgCG-------GCGCCGGCAGUg-GCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 58966 0.67 0.757415
Target:  5'- gGCGCgaagaaGCGcGCCGUCAggcacugguggUCGGCGUGGu -3'
miRNA:   3'- aCGCGg-----CGC-CGGCAGU-----------GGCUGCACUg -5'
14503 5' -61.6 NC_003521.1 + 217618 0.67 0.757415
Target:  5'- gGCGUCuCGGCCGcCAucuccUCGGCGUGGu -3'
miRNA:   3'- aCGCGGcGCCGGCaGU-----GGCUGCACUg -5'
14503 5' -61.6 NC_003521.1 + 112406 0.67 0.757415
Target:  5'- gUGCGCCGacCGGCCGcCuuucggACCGACGcccgcucaGGCg -3'
miRNA:   3'- -ACGCGGC--GCCGGCaG------UGGCUGCa-------CUG- -5'
14503 5' -61.6 NC_003521.1 + 40363 0.67 0.757415
Target:  5'- gGCGCUGCgcagGGCCuucuccacgauGUCGgCGuCGUGGCg -3'
miRNA:   3'- aCGCGGCG----CCGG-----------CAGUgGCuGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 35482 0.67 0.757415
Target:  5'- gGCGCaGCuGCCGcCGCCGAgGaGGCg -3'
miRNA:   3'- aCGCGgCGcCGGCaGUGGCUgCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 145725 0.67 0.747568
Target:  5'- aGCGCgCGCGGCCGcUCAaggcgcccgagccCCuGCGcGACu -3'
miRNA:   3'- aCGCG-GCGCCGGC-AGU-------------GGcUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 3645 0.67 0.739431
Target:  5'- cGUGCCaCGGCCGcCGCCGucugccucgGCGgccggGACc -3'
miRNA:   3'- aCGCGGcGCCGGCaGUGGC---------UGCa----CUG- -5'
14503 5' -61.6 NC_003521.1 + 123689 0.67 0.735794
Target:  5'- cUGCGCCaGCuGCUGgucgaucaucgagCGCaCGAUGUGACa -3'
miRNA:   3'- -ACGCGG-CGcCGGCa------------GUG-GCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 126074 0.67 0.730313
Target:  5'- aGCaGCUGUGGCCG-CGCCacccccacGGCGUGcCg -3'
miRNA:   3'- aCG-CGGCGCCGGCaGUGG--------CUGCACuG- -5'
14503 5' -61.6 NC_003521.1 + 129844 0.67 0.730313
Target:  5'- gGC-CCGUGGCCGUgcccugcuaCugCGACGagugggUGACg -3'
miRNA:   3'- aCGcGGCGCCGGCA---------GugGCUGC------ACUG- -5'
14503 5' -61.6 NC_003521.1 + 60683 0.67 0.748468
Target:  5'- cGUGCUGCGGCCG-CGCgGGgGacccgggGGCg -3'
miRNA:   3'- aCGCGGCGCCGGCaGUGgCUgCa------CUG- -5'
14503 5' -61.6 NC_003521.1 + 240039 0.67 0.721122
Target:  5'- gGCGCCG-GGCgGUCcuCCGcCGaUGGCg -3'
miRNA:   3'- aCGCGGCgCCGgCAGu-GGCuGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 145880 0.67 0.721122
Target:  5'- gGCGCCGacgacgaGGCCGcCGgCGGCGgGAg -3'
miRNA:   3'- aCGCGGCg------CCGGCaGUgGCUGCaCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.