miRNA display CGI


Results 101 - 120 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 113363 0.67 0.724807
Target:  5'- gGCGCUgGCGGgCGUCaacaacggccagcugGCCGACGagccgcUGGCg -3'
miRNA:   3'- aCGCGG-CGCCgGCAG---------------UGGCUGC------ACUG- -5'
14503 5' -61.6 NC_003521.1 + 166252 0.67 0.757415
Target:  5'- cGCGCCGCcgcuCCGUCGCCGcCcucaGACa -3'
miRNA:   3'- aCGCGGCGcc--GGCAGUGGCuGca--CUG- -5'
14503 5' -61.6 NC_003521.1 + 180878 0.67 0.721122
Target:  5'- cGCGCCG-GGCUGUUgAUCGGCGUccacgucggaGACc -3'
miRNA:   3'- aCGCGGCgCCGGCAG-UGGCUGCA----------CUG- -5'
14503 5' -61.6 NC_003521.1 + 61901 0.67 0.721122
Target:  5'- aGCcUCGUcGCCGUCAUCGugGUcGGCg -3'
miRNA:   3'- aCGcGGCGcCGGCAGUGGCugCA-CUG- -5'
14503 5' -61.6 NC_003521.1 + 39812 0.67 0.721122
Target:  5'- gGCGCCG-GGCgGUCcuCCGcCGaUGGCg -3'
miRNA:   3'- aCGCGGCgCCGgCAGu-GGCuGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 20643 0.67 0.721122
Target:  5'- --aGCCGCGcGCUGgugggCGCCuACGUGAUg -3'
miRNA:   3'- acgCGGCGC-CGGCa----GUGGcUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 177592 0.67 0.710936
Target:  5'- gGCGCCGCcgguuccGGCCGUUccgcuGCCGgaauccGCG-GACg -3'
miRNA:   3'- aCGCGGCG-------CCGGCAG-----UGGC------UGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 122861 0.67 0.711865
Target:  5'- aGCGCUGgugcUGGCCGcCGCCG-CGaUGAUg -3'
miRNA:   3'- aCGCGGC----GCCGGCaGUGGCuGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 26499 0.67 0.745766
Target:  5'- gGCGCgaUGCGcucuucaccaccacGCUGcUCACCGugGUGAUg -3'
miRNA:   3'- aCGCG--GCGC--------------CGGC-AGUGGCugCACUG- -5'
14503 5' -61.6 NC_003521.1 + 139426 0.67 0.747568
Target:  5'- cGgGCucuccugCGUGGCCGUCAagCGGCGcGACg -3'
miRNA:   3'- aCgCG-------GCGCCGGCAGUg-GCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 58966 0.67 0.757415
Target:  5'- gGCGCgaagaaGCGcGCCGUCAggcacugguggUCGGCGUGGu -3'
miRNA:   3'- aCGCGg-----CGC-CGGCAGU-----------GGCUGCACUg -5'
14503 5' -61.6 NC_003521.1 + 21286 0.67 0.748468
Target:  5'- aGCGCuuCGCGGUCuggCugCG-CGUGGCg -3'
miRNA:   3'- aCGCG--GCGCCGGca-GugGCuGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 184848 0.67 0.757415
Target:  5'- --gGCUGCGGCCccugcaCAUCGGCGUGGu -3'
miRNA:   3'- acgCGGCGCCGGca----GUGGCUGCACUg -5'
14503 5' -61.6 NC_003521.1 + 106766 0.67 0.757415
Target:  5'- gGCGCCcagGCGGUCGaaACCaGGCGUGu- -3'
miRNA:   3'- aCGCGG---CGCCGGCagUGG-CUGCACug -5'
14503 5' -61.6 NC_003521.1 + 74419 0.67 0.757415
Target:  5'- cUGUGCCGCGGCUa----CGACuUGACg -3'
miRNA:   3'- -ACGCGGCGCCGGcagugGCUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 48780 0.67 0.757415
Target:  5'- gGaCGCCGCGucuGCCGcgcaCGCCGGCGgugcagaaccUGACg -3'
miRNA:   3'- aC-GCGGCGC---CGGCa---GUGGCUGC----------ACUG- -5'
14503 5' -61.6 NC_003521.1 + 44421 0.67 0.757415
Target:  5'- cUGUGCCGCuGCC--CGCCcauCGUGACg -3'
miRNA:   3'- -ACGCGGCGcCGGcaGUGGcu-GCACUG- -5'
14503 5' -61.6 NC_003521.1 + 154887 0.67 0.756525
Target:  5'- aGCGCuCGCGGCgcgagaaCGUgcucuucgaCGCCGACcUGACc -3'
miRNA:   3'- aCGCG-GCGCCG-------GCA---------GUGGCUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 176070 0.67 0.748468
Target:  5'- gGUGCCGC-GCCG--GCCGGCGUcuuGGCc -3'
miRNA:   3'- aCGCGGCGcCGGCagUGGCUGCA---CUG- -5'
14503 5' -61.6 NC_003521.1 + 204817 0.67 0.721122
Target:  5'- gGgGCCGCcaccuCCGUCGCCGuCGcUGACc -3'
miRNA:   3'- aCgCGGCGcc---GGCAGUGGCuGC-ACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.