miRNA display CGI


Results 121 - 140 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 21286 0.67 0.748468
Target:  5'- aGCGCuuCGCGGUCuggCugCG-CGUGGCg -3'
miRNA:   3'- aCGCG--GCGCCGGca-GugGCuGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 7967 0.67 0.730313
Target:  5'- gGUGUCGCGGCCGggaggguccgCGgCGGCGgggGAg -3'
miRNA:   3'- aCGCGGCGCCGGCa---------GUgGCUGCa--CUg -5'
14503 5' -61.6 NC_003521.1 + 26499 0.67 0.745766
Target:  5'- gGCGCgaUGCGcucuucaccaccacGCUGcUCACCGugGUGAUg -3'
miRNA:   3'- aCGCG--GCGC--------------CGGC-AGUGGCugCACUG- -5'
14503 5' -61.6 NC_003521.1 + 108957 0.67 0.727564
Target:  5'- cGCGCgGCacgauGGCCGUgGCCGccuugaaccagcccACGuUGACg -3'
miRNA:   3'- aCGCGgCG-----CCGGCAgUGGC--------------UGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 166252 0.67 0.757415
Target:  5'- cGCGCCGCcgcuCCGUCGCCGcCcucaGACa -3'
miRNA:   3'- aCGCGGCGcc--GGCAGUGGCuGca--CUG- -5'
14503 5' -61.6 NC_003521.1 + 204817 0.67 0.721122
Target:  5'- gGgGCCGCcaccuCCGUCGCCGuCGcUGACc -3'
miRNA:   3'- aCgCGGCGcc---GGCAGUGGCuGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 122744 0.67 0.711865
Target:  5'- gGCGCCGCcgauGGCUGaCACCGggcACGgggaUGGCg -3'
miRNA:   3'- aCGCGGCG----CCGGCaGUGGC---UGC----ACUG- -5'
14503 5' -61.6 NC_003521.1 + 86700 0.67 0.730313
Target:  5'- cGgGCCGCGGCgG-CGaCGACGaGGCg -3'
miRNA:   3'- aCgCGGCGCCGgCaGUgGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 199313 0.67 0.730313
Target:  5'- gGUGUCGCuGCCGUUACUGGuguCGcUGGCg -3'
miRNA:   3'- aCGCGGCGcCGGCAGUGGCU---GC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 197341 0.67 0.739431
Target:  5'- gGcCGCCGCGGCCagcacgGcCGCCG-CGcUGGCc -3'
miRNA:   3'- aC-GCGGCGCCGG------CaGUGGCuGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 16414 0.67 0.730313
Target:  5'- aGCGCC-UGGCCGgcgaggugUACCGGC-UGGCc -3'
miRNA:   3'- aCGCGGcGCCGGCa-------GUGGCUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 203308 0.67 0.730313
Target:  5'- -uUGCCGuuGCUGUCGCUGaucugguacaGCGUGGCg -3'
miRNA:   3'- acGCGGCgcCGGCAGUGGC----------UGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 129644 0.67 0.730313
Target:  5'- -cCGuCCGCGgcGCCGUCGCCGGgGcGGCc -3'
miRNA:   3'- acGC-GGCGC--CGGCAGUGGCUgCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 109579 0.67 0.738523
Target:  5'- aGCGCCGCucccgucGGCa-UCGCCGuCGcGACg -3'
miRNA:   3'- aCGCGGCG-------CCGgcAGUGGCuGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 181202 0.67 0.739431
Target:  5'- cUGCgaGCCGCGGUCGcCGCCGGgGccGCc -3'
miRNA:   3'- -ACG--CGGCGCCGGCaGUGGCUgCacUG- -5'
14503 5' -61.6 NC_003521.1 + 122861 0.67 0.711865
Target:  5'- aGCGCUGgugcUGGCCGcCGCCG-CGaUGAUg -3'
miRNA:   3'- aCGCGGC----GCCGGCaGUGGCuGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 204754 0.68 0.693181
Target:  5'- gGCGCCGCcGCCGcccuguugugUCGgCGGCG-GGCu -3'
miRNA:   3'- aCGCGGCGcCGGC----------AGUgGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 102757 0.68 0.702548
Target:  5'- aGCGCCucagcuguccGCGGCgGUCGCgGGCGa--- -3'
miRNA:   3'- aCGCGG----------CGCCGgCAGUGgCUGCacug -5'
14503 5' -61.6 NC_003521.1 + 182403 0.68 0.701614
Target:  5'- aGCGCUGCGGCuuCGUCaACCGccgcaucACGcGGCc -3'
miRNA:   3'- aCGCGGCGCCG--GCAG-UGGC-------UGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 212667 0.68 0.702548
Target:  5'- gGCGUCGCGGgCaugGUCGCCGcCGUcGCc -3'
miRNA:   3'- aCGCGGCGCCgG---CAGUGGCuGCAcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.