miRNA display CGI


Results 41 - 60 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 209723 0.73 0.394213
Target:  5'- uUGCGCCGCguguaccGGCCGcCGCCGuCGUcGCu -3'
miRNA:   3'- -ACGCGGCG-------CCGGCaGUGGCuGCAcUG- -5'
14503 5' -61.6 NC_003521.1 + 27751 0.73 0.402926
Target:  5'- aGCGCCGCGauGUCGUC-CCGACGgcGCa -3'
miRNA:   3'- aCGCGGCGC--CGGCAGuGGCUGCacUG- -5'
14503 5' -61.6 NC_003521.1 + 151082 0.73 0.419078
Target:  5'- cGCGCCgGCuGCCGUCACCGccccCGUGcCc -3'
miRNA:   3'- aCGCGG-CGcCGGCAGUGGCu---GCACuG- -5'
14503 5' -61.6 NC_003521.1 + 125406 0.73 0.387175
Target:  5'- cGCGCCGCGGCgcugaGUCcggagGCCGugGcGGCc -3'
miRNA:   3'- aCGCGGCGCCGg----CAG-----UGGCugCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 104906 0.73 0.395
Target:  5'- cGCgGCCGUGGCCGagGCCGGCacaaaGACg -3'
miRNA:   3'- aCG-CGGCGCCGGCagUGGCUGca---CUG- -5'
14503 5' -61.6 NC_003521.1 + 31822 0.73 0.419078
Target:  5'- aGCGCCGUcucGGCCcgggCGCCGAagGUGGCg -3'
miRNA:   3'- aCGCGGCG---CCGGca--GUGGCUg-CACUG- -5'
14503 5' -61.6 NC_003521.1 + 168545 0.73 0.410953
Target:  5'- aGCGCgGCGGCgG-CGCUGGCG-GGCu -3'
miRNA:   3'- aCGCGgCGCCGgCaGUGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 181460 0.73 0.419078
Target:  5'- gGCGuCCaGCGGCUGgcgCGCCGccugcaGCGUGGCg -3'
miRNA:   3'- aCGC-GG-CGCCGGCa--GUGGC------UGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 18902 0.73 0.419078
Target:  5'- gGCGCCGCGGCag-CcCCGAaggGUGGCg -3'
miRNA:   3'- aCGCGGCGCCGgcaGuGGCUg--CACUG- -5'
14503 5' -61.6 NC_003521.1 + 124021 0.72 0.4273
Target:  5'- gGUGCCGCGGUgCGUCAgCGGCugcuUGGCg -3'
miRNA:   3'- aCGCGGCGCCG-GCAGUgGCUGc---ACUG- -5'
14503 5' -61.6 NC_003521.1 + 116886 0.72 0.444026
Target:  5'- cGCgGCUGCGGCgGcgCGCCGGCGggaGACc -3'
miRNA:   3'- aCG-CGGCGCCGgCa-GUGGCUGCa--CUG- -5'
14503 5' -61.6 NC_003521.1 + 142357 0.72 0.452526
Target:  5'- gGcCGCCGCGGCCGcCGCCGccuccuccaACGUaGCc -3'
miRNA:   3'- aC-GCGGCGCCGGCaGUGGC---------UGCAcUG- -5'
14503 5' -61.6 NC_003521.1 + 126972 0.72 0.455093
Target:  5'- cGCGCCGUcgucgccGGCCGccccgcugccgcugC-CCGACGUGGCg -3'
miRNA:   3'- aCGCGGCG-------CCGGCa-------------GuGGCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 240123 0.72 0.461114
Target:  5'- gGCG-UGCGGUCGUC-CCGGCG-GGCg -3'
miRNA:   3'- aCGCgGCGCCGGCAGuGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 58829 0.72 0.444026
Target:  5'- cGCGUgGCGGCCGUgacguUACUGGCGcgGAUg -3'
miRNA:   3'- aCGCGgCGCCGGCA-----GUGGCUGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 89961 0.72 0.469787
Target:  5'- cGCGUCucugGCGGCCGUUcgggguucaACCGGCGggUGGCg -3'
miRNA:   3'- aCGCGG----CGCCGGCAG---------UGGCUGC--ACUG- -5'
14503 5' -61.6 NC_003521.1 + 235295 0.72 0.452526
Target:  5'- cGCGCCgGCuGCCGUCACCGuCGcuGCu -3'
miRNA:   3'- aCGCGG-CGcCGGCAGUGGCuGCacUG- -5'
14503 5' -61.6 NC_003521.1 + 11735 0.72 0.435617
Target:  5'- gGCGa-GuCGGCCGUCAUCGACG-GGCc -3'
miRNA:   3'- aCGCggC-GCCGGCAGUGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 127783 0.72 0.469787
Target:  5'- cGgGCgGCGGCCGUaGCCGcACGUG-Cu -3'
miRNA:   3'- aCgCGgCGCCGGCAgUGGC-UGCACuG- -5'
14503 5' -61.6 NC_003521.1 + 104017 0.72 0.452526
Target:  5'- -aCGCCGgGGUCGUCGgCGggcaGCGUGACc -3'
miRNA:   3'- acGCGGCgCCGGCAGUgGC----UGCACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.